From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from eggs.gnu.org ([2001:4830:134:3::10]:53808) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1fxYMx-0001a8-KE for guix-patches@gnu.org; Wed, 05 Sep 2018 10:01:24 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1fxYMl-0004Yc-Ji for guix-patches@gnu.org; Wed, 05 Sep 2018 10:01:16 -0400 Received: from debbugs.gnu.org ([208.118.235.43]:42275) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1fxYMl-0004WE-69 for guix-patches@gnu.org; Wed, 05 Sep 2018 10:01:07 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1fxYMl-0005C4-3D for guix-patches@gnu.org; Wed, 05 Sep 2018 10:01:07 -0400 Subject: [bug#32642] [PATCH 13/16] gnu: Add python-pyfaidx. Resent-Message-ID: From: Ricardo Wurmus Date: Wed, 5 Sep 2018 16:00:03 +0200 Message-ID: <20180905140006.10783-8-ricardo.wurmus@mdc-berlin.de> In-Reply-To: <20180905140006.10783-1-ricardo.wurmus@mdc-berlin.de> References: <20180905140006.10783-1-ricardo.wurmus@mdc-berlin.de> MIME-Version: 1.0 Content-Type: text/plain List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+kyle=kyleam.com@gnu.org Sender: "Guix-patches" To: 32642@debbugs.gnu.org Cc: Ricardo Wurmus * gnu/packages/bioinformatics.scm (python-pyfaidx): New variable. --- gnu/packages/bioinformatics.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 466e40242..624bae95d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13603,3 +13603,25 @@ bound.") "Pypairix is a Python module for fast querying on a pairix-indexed bgzipped text file that contains a pair of genomic coordinates per line.") (license license:expat))) + +(define-public python-pyfaidx + (package + (name "python-pyfaidx") + (version "0.5.4.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyfaidx" version)) + (sha256 + (base32 + "0y5zyjksj1rdglj601xd2bbni5abhdh622y3ck76chyzxz9z4rx8")))) + (build-system python-build-system) + (propagated-inputs + `(("python-setuptools" ,python-setuptools) + ("python-six" ,python-six))) + (home-page "http://mattshirley.com") + (synopsis "Random access to fasta subsequences") + (description + "This package provides procedures for efficient pythonic random access to +fasta subsequences.") + (license license:bsd-3))) -- 2.18.0