From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from eggs.gnu.org ([2001:4830:134:3::10]:48595) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1fvKVc-0007tu-QT for guix-patches@gnu.org; Thu, 30 Aug 2018 06:49:06 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1fvKVa-0008O7-44 for guix-patches@gnu.org; Thu, 30 Aug 2018 06:49:04 -0400 Received: from debbugs.gnu.org ([208.118.235.43]:32947) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1fvKVa-0008Nz-0C for guix-patches@gnu.org; Thu, 30 Aug 2018 06:49:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1fvKVZ-0006Lo-S2 for guix-patches@gnu.org; Thu, 30 Aug 2018 06:49:01 -0400 Subject: [bug#32587] [PATCH] gnu: Add r-pore. Resent-Message-ID: Received: from eggs.gnu.org ([2001:4830:134:3::10]:48036) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1fvKUa-0006HJ-6W for guix-patches@gnu.org; Thu, 30 Aug 2018 06:48:02 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1fvKKH-0001bs-B7 for guix-patches@gnu.org; Thu, 30 Aug 2018 06:37:26 -0400 Received: from venus.bbbm.mdc-berlin.de ([141.80.25.30]:59836) by eggs.gnu.org with esmtps (TLS1.0:DHE_RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1fvKKH-0001bP-1S for guix-patches@gnu.org; Thu, 30 Aug 2018 06:37:21 -0400 Received: from localhost (localhost [127.0.0.1]) by venus.bbbm.mdc-berlin.de (Postfix) with ESMTP id A3F98380678 for ; Thu, 30 Aug 2018 12:37:19 +0200 (CEST) Received: from venus.bbbm.mdc-berlin.de ([127.0.0.1]) by localhost (venus.bbbm.mdc-berlin.de [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id LEngxVhNsQqF for ; Thu, 30 Aug 2018 12:37:19 +0200 (CEST) Received: from SW-IT-P-CAS1.mdc-berlin.net (puck.citx.mdc-berlin.de [141.80.36.101]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-SHA384 (256/256 bits)) (No client certificate requested) by venus.bbbm.mdc-berlin.de (Postfix) with ESMTPS for ; Thu, 30 Aug 2018 12:37:19 +0200 (CEST) From: pimi Date: Thu, 30 Aug 2018 12:37:03 +0200 Message-ID: <20180830103703.10473-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 Content-Type: text/plain List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+kyle=kyleam.com@gnu.org Sender: "Guix-patches" To: 32587@debbugs.gnu.org Cc: pimi gnu/packages/bioinformatics.scm (r-pore): New variable --- gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 22a00894c..0605e4564 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13558,3 +13558,30 @@ reference transcripts provided in a annotation file (also in GTF/GFF3 format). (list license:expat ;license for gffcompare license:artistic2.0))))) ;license for gclib + +(define-public r-pore + (package + (name "r-pore") + (version "0.24") + (source + (origin + (method url-fetch) + (uri (string-append + "https://sourceforge.net/projects/rpore/files/"version"/poRe_"version".tar.gz")) + (sha256 + (base32 "0pih9nljbv8g4x8rkk29i7aqq681b782r5s5ynp4nw9yzqnmmksv")))) + (properties `((upstream-name . "poRe"))) + (build-system r-build-system) + (native-inputs + `(("r-rhdf5" ,r-rhdf5) + ("r-shiny" ,r-shiny) + ("r-svdialogs" ,r-svdialogs) + ("r-data-table" ,r-data-table) + ("r-bit64" ,r-bit64))) + (home-page "https://sourceforge.net/projects/rpore/files/") + (synopsis "This R package enable visualisation of nanopore sequencing data") + (description + "The Oxford Nanopore MinION is a revolutionary sequencer with a unique model of data +delivery, requiring novel tools for the novice user. This package enables +organisation and visualisation of MinION data.") + (license license:gpl3))) -- 2.17.1