From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from eggs.gnu.org ([2001:4830:134:3::10]:38455) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1fhwMJ-0008Un-Mw for guix-patches@gnu.org; Tue, 24 Jul 2018 08:24:08 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1fhwME-0000U0-No for guix-patches@gnu.org; Tue, 24 Jul 2018 08:24:07 -0400 Received: from debbugs.gnu.org ([208.118.235.43]:49655) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1fhwME-0000Tw-Jj for guix-patches@gnu.org; Tue, 24 Jul 2018 08:24:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1fhwME-0000C3-Dn for guix-patches@gnu.org; Tue, 24 Jul 2018 08:24:02 -0400 Subject: [bug#32259] [PATCH 4/4] gnu: Add r-blockfest. Resent-Message-ID: From: Ricardo Wurmus Date: Tue, 24 Jul 2018 14:22:08 +0200 Message-ID: <20180724122208.24086-4-ricardo.wurmus@mdc-berlin.de> In-Reply-To: <20180724122208.24086-1-ricardo.wurmus@mdc-berlin.de> References: <20180724122208.24086-1-ricardo.wurmus@mdc-berlin.de> MIME-Version: 1.0 Content-Type: text/plain List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+kyle=kyleam.com@gnu.org Sender: "Guix-patches" To: 32259@debbugs.gnu.org Cc: Ricardo Wurmus * gnu/packages/cran.scm (r-blockfest): New variable. --- gnu/packages/cran.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index f1511c097..c04598141 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4726,3 +4726,27 @@ splice site positions.") "BASIX provides some efficient C/C++ implementations to speed up calculations in R.") (license license:gpl2))) + +(define-public r-blockfest + (package + (name "r-blockfest") + (version "1.6") + (source + (origin + (method url-fetch) + (uri (cran-uri "BlockFeST" version)) + (sha256 + (base32 + "0hj7a5as7nxbgjac7lbj6qfwffx3g8x8phpf9a55f1c9cdzi73a5")))) + (properties `((upstream-name . "BlockFeST"))) + (build-system r-build-system) + (propagated-inputs `(("r-basix" ,r-basix))) + (home-page "https://cran.r-project.org/web/packages/BlockFeST/") + (synopsis "Bayesian calculation of region-specific fixation index") + (description + "This package provides an R implementation of an extension of the +BayeScan software for codominant markers, adding the option to group +individual SNPs into pre-defined blocks. A typical application of this new +approach is the identification of genomic regions, genes, or gene sets +containing one or more SNPs that evolved under directional selection.") + (license license:gpl2))) -- 2.18.0