From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
To: 32259@debbugs.gnu.org
Cc: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Subject: [bug#32259] [PATCH 4/4] gnu: Add r-blockfest.
Date: Tue, 24 Jul 2018 14:22:08 +0200 [thread overview]
Message-ID: <20180724122208.24086-4-ricardo.wurmus@mdc-berlin.de> (raw)
In-Reply-To: <20180724122208.24086-1-ricardo.wurmus@mdc-berlin.de>
* gnu/packages/cran.scm (r-blockfest): New variable.
---
gnu/packages/cran.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index f1511c097..c04598141 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -4726,3 +4726,27 @@ splice site positions.")
"BASIX provides some efficient C/C++ implementations to speed up
calculations in R.")
(license license:gpl2)))
+
+(define-public r-blockfest
+ (package
+ (name "r-blockfest")
+ (version "1.6")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "BlockFeST" version))
+ (sha256
+ (base32
+ "0hj7a5as7nxbgjac7lbj6qfwffx3g8x8phpf9a55f1c9cdzi73a5"))))
+ (properties `((upstream-name . "BlockFeST")))
+ (build-system r-build-system)
+ (propagated-inputs `(("r-basix" ,r-basix)))
+ (home-page "https://cran.r-project.org/web/packages/BlockFeST/")
+ (synopsis "Bayesian calculation of region-specific fixation index")
+ (description
+ "This package provides an R implementation of an extension of the
+BayeScan software for codominant markers, adding the option to group
+individual SNPs into pre-defined blocks. A typical application of this new
+approach is the identification of genomic regions, genes, or gene sets
+containing one or more SNPs that evolved under directional selection.")
+ (license license:gpl2)))
--
2.18.0
next prev parent reply other threads:[~2018-07-24 12:24 UTC|newest]
Thread overview: 7+ messages / expand[flat|nested] mbox.gz Atom feed top
2018-07-24 12:19 [bug#32259] Add R packages from CRAN Ricardo Wurmus
2018-07-24 12:22 ` [bug#32259] [PATCH 1/4] gnu: Add r-doby Ricardo Wurmus
2018-07-24 12:22 ` [bug#32259] [PATCH 2/4] gnu: Add r-refgenome Ricardo Wurmus
2018-07-24 12:22 ` [bug#32259] [PATCH 3/4] gnu: Add r-basix Ricardo Wurmus
2018-07-29 13:33 ` Ludovic Courtès
2018-07-24 12:22 ` Ricardo Wurmus [this message]
2018-08-16 15:06 ` bug#32259: [PATCH 1/4] gnu: Add r-doby Ricardo Wurmus
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
List information: https://guix.gnu.org/
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=20180724122208.24086-4-ricardo.wurmus@mdc-berlin.de \
--to=ricardo.wurmus@mdc-berlin.de \
--cc=32259@debbugs.gnu.org \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
Code repositories for project(s) associated with this public inbox
https://git.savannah.gnu.org/cgit/guix.git
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).