From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from eggs.gnu.org ([2001:4830:134:3::10]:55994) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1dhMR4-0006vF-4C for guix-patches@gnu.org; Mon, 14 Aug 2017 16:58:07 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1dhMR0-0000TZ-3o for guix-patches@gnu.org; Mon, 14 Aug 2017 16:58:06 -0400 Received: from debbugs.gnu.org ([208.118.235.43]:56500) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1dhMR0-0000TR-0Y for guix-patches@gnu.org; Mon, 14 Aug 2017 16:58:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1dhMQz-0000Qw-Mf for guix-patches@gnu.org; Mon, 14 Aug 2017 16:58:01 -0400 Subject: [bug#28089] [PATCH 01/29] gnu: Add r-interactivedisplaybase. References: <20170814205458.10484-1-rekado@elephly.net> In-Reply-To: <20170814205458.10484-1-rekado@elephly.net> Resent-Message-ID: From: Ricardo Wurmus Date: Mon, 14 Aug 2017 22:56:43 +0200 Message-Id: <20170814205711.10797-1-rekado@elephly.net> List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+kyle=kyleam.com@gnu.org Sender: "Guix-patches" To: 28089@debbugs.gnu.org Cc: Ricardo Wurmus * gnu/packages/bioinformatics.scm (r-interactivedisplaybase): New variable. --- gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9d64294e4..717b5acec 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9229,6 +9229,30 @@ distributional differences between lanes (e.g., sequencing depth): global-scaling and full-quantile normalization.") (license license:artistic2.0))) +(define-public r-interactivedisplaybase + (package + (name "r-interactivedisplaybase") + (version "1.14.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "interactiveDisplayBase" version)) + (sha256 + (base32 + "12f6ap4bl3h2iwwhg8i3r9a7yyd28d8i5lb3fj1vnfvjs762r7r7")))) + (properties + `((upstream-name . "interactiveDisplayBase"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-shiny" ,r-shiny))) + (home-page "http://bioconductor.org/packages/interactiveDisplayBase") + (synopsis "Base package for web displays of Bioconductor objects") + (description + "This package contains the basic methods needed to generate interactive +Shiny-based display methods for Bioconductor objects.") + (license license:artistic2.0))) + (define htslib-for-sambamba (let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5")) (package -- 2.13.3