From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp2.migadu.com ([2001:41d0:403:4876::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms13.migadu.com with LMTPS id UJSfDQE+QmfybAAAe85BDQ:P1 (envelope-from ) for ; Sat, 23 Nov 2024 20:41:37 +0000 Received: from aspmx1.migadu.com ([2001:41d0:403:4876::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp2.migadu.com with LMTPS id UJSfDQE+QmfybAAAe85BDQ (envelope-from ) for ; Sat, 23 Nov 2024 21:41:37 +0100 X-Envelope-To: larch@yhetil.org Authentication-Results: aspmx1.migadu.com; dkim=pass header.d=debbugs.gnu.org header.s=debbugs-gnu-org header.b=ghQ7AGbK; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20230601 header.b=dQznnd9K; dmarc=fail reason="SPF not aligned (relaxed), DKIM not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" ARC-Seal: i=1; s=key1; d=yhetil.org; t=1732394497; a=rsa-sha256; cv=none; b=JweZY27ogETjlMwiDNb+pPKxbFq9whkkOa+4DvKYBxNNwJSwaDhkyPTbErKCOxXCEil6NP 5V6TceI/yq4LJVVFGQK3iKFBHq0b0LuR46W00psLsRphVvS6CunRf6WxilKDpwYRXADAfD urBMwlE4WM9AMjbCdbYCWzVezGxCMKRePEE7yaaJsojey/MYiUXgE6BJ13xSit5MzeheT5 W54TKJsVWuNW2A1JHprYrXK/fymWHnOTy3/gP1zzXaySG0bcqxYChmhyAuVd3G2Ge0La0i BVva/8rYY2IMXuXb7XstL3GLzVIQRBfqz9CX70Bi1Sm3HArSf1OqM6JvQR5UXA== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=pass header.d=debbugs.gnu.org header.s=debbugs-gnu-org header.b=ghQ7AGbK; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20230601 header.b=dQznnd9K; dmarc=fail reason="SPF not aligned (relaxed), DKIM not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1732394497; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-transfer-encoding:content-transfer-encoding:resent-cc: resent-from:resent-sender:resent-message-id:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post:dkim-signature; bh=/DMJVGYiNBTiKbj5fJTu9OC1/CvFj+76kjxU3prvBgA=; b=n0KNOiYCJ1PXJ8U3/vFMuEDZxg6fVRF+Dez/KPwKLcqZuGOGIb65pDKv/5/QIztNZ5XqCK 37x5x29y7M2FIcYxHR4wUN0ftQIE90WryLWzdKaau7HytmfpZMWVK9fGFz7u+7XCWoSE64 JSa0LsEmUkctodVqiXL7ii2lcnp+E0zcJX9eZFfJqB/4hwWfy3GS1vaJSdVTLEKT11O/Hc F1t4UfRki/dru5HXjxXfWxZZbzEVUVV/zC/cJj8+HM9+RRSid50XHNgQG4ifmGsjGIpK34 HN7RfuGGxfoTjhAqLkEVruD3kecafHMmI8U0tnPCrmtnEV075OKKiLxY21oguw== Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id DE06587B27 for ; Sat, 23 Nov 2024 21:41:36 +0100 (CET) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1tEwDX-0004dB-R0; Sat, 23 Nov 2024 14:54:55 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1tEwD0-0003Xp-8O for guix-patches@gnu.org; Sat, 23 Nov 2024 14:54:22 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1tEwCz-0000jR-1y for guix-patches@gnu.org; Sat, 23 Nov 2024 14:54:21 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:References:In-Reply-To:Date:From:To:Subject; bh=/DMJVGYiNBTiKbj5fJTu9OC1/CvFj+76kjxU3prvBgA=; b=ghQ7AGbKUS7bJ3wZoeIoAMv7jYZNRJbopmrzYc9pTW1xvWUje01UWqTP1qkt7M/tRZU3SyD8Rozi8/cCXSSW/oMLxLT4uscZmWAhG3J+TP2uquSrTlCv8aJ4QjUi/ZLuou7nqGAm+nfF+kupcHqtEtPtBU6lcbR1TOMGi71ho1g9rmC8kR9sEyeLNOFyimjB06uX/P6a01TbSDJsEFXqsrCRwyJsE59k43jRTHTl9rQ5nbH/3rSLwtYgeRUkTHtqHVOi6Q9chS7E9tScmEBBibmqqxkGt4xOBcX2M9bN4CVPtm/UbDHTKBivbQb9BJiOR8HxRqVY4/C/KSIleBgKNA==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1tEwCx-0002oc-9B; Sat, 23 Nov 2024 14:54:19 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#74497] [PATCH 44/46] gnu: python-yt: Update to 4.4.0. Resent-From: Sharlatan Hellseher Original-Sender: "Debbugs-submit" Resent-CC: andreas@enge.fr, bavier@posteo.net, sharlatanus@gmail.com, guix-patches@gnu.org Resent-Date: Sat, 23 Nov 2024 19:54:19 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 74497 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 74497@debbugs.gnu.org Cc: Sharlatan Hellseher , Andreas Enge , Eric Bavier , Sharlatan Hellseher X-Debbugs-Original-Xcc: Andreas Enge , Eric Bavier , Sharlatan Hellseher Received: via spool by 74497-submit@debbugs.gnu.org id=B74497.173239163310446 (code B ref 74497); Sat, 23 Nov 2024 19:54:19 +0000 Received: (at 74497) by debbugs.gnu.org; 23 Nov 2024 19:53:53 +0000 Received: from localhost ([127.0.0.1]:59414 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tEwCW-0002iK-UJ for submit@debbugs.gnu.org; Sat, 23 Nov 2024 14:53:53 -0500 Received: from mail-wr1-f44.google.com ([209.85.221.44]:57658) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1tEwCI-0002dh-7t for 74497@debbugs.gnu.org; Sat, 23 Nov 2024 14:53:38 -0500 Received: by mail-wr1-f44.google.com with SMTP id ffacd0b85a97d-382423f4082so2239109f8f.3 for <74497@debbugs.gnu.org>; Sat, 23 Nov 2024 11:53:38 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20230601; t=1732391552; x=1732996352; darn=debbugs.gnu.org; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:from:to:cc:subject:date :message-id:reply-to; bh=/DMJVGYiNBTiKbj5fJTu9OC1/CvFj+76kjxU3prvBgA=; b=dQznnd9KGLCIilV+avKizWymwZiUMc9tsN1pt2jjidUV6xxiIbwt0/uAZ2HioS75MX pnlaCTAvnMbfHnpzV9KJE61z7eOk93B72ZpwlW/xNsqdVv5XdBr19S5MNTPeY/qnnT1Q 5ROQuNYMjh+NAIicflJwxrMGjgmWDCRElHaL7vlPVGIYbfnb2tjlIdUB1YCgOqYsfGFF x3S+gwGyc2q9h/PzaMqgivWI8QHUSfnzNni+xZPs8FYnrSa6MCkGGL7AddyQapi9L30N Eoyl2Bybf8Wpems/HbzlAfVefJ3TV8sHK0qew/MZQjIOcUe3eTG8L8TTwDOrww97WTcb APlA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20230601; t=1732391552; x=1732996352; h=content-transfer-encoding:mime-version:references:in-reply-to :message-id:date:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=/DMJVGYiNBTiKbj5fJTu9OC1/CvFj+76kjxU3prvBgA=; b=Scnl1tx9q6vtvb+75HBFb431G+wMSsdDIzYuEy26R7pqmpcN385fBOu7/baY028FDf jK+CsFWQQZHk7f5l+R6RzjOfBI5S0Fb7ROZ0cZYgmBHhsRNwxnr6KzNaMc8dUv5qY+Cf 58dUb9jdlrD3sKSK30sPd8RzxOWSuAGQ+7FgSsHkAfa/reb1St3446YMi167Ud9sarOd pHpfbEJT4BNlF8HUyUZKH7ppKM4J/YexQmJIsTV/vqfZpeGL6CS8v/UAF2WpLNBPtWqv 1XRiw7jz2AaVkBH6BraXq9p0Lb2UYffUA7Qg8bbFO36RvA50TjxRUyeTSdpyp8LK85E6 7ONw== X-Gm-Message-State: AOJu0YxEBJMqIeycddCm58lf1o9W4OxNJtdDAyLUhxhx3g/MYNul0IVM 9T5OlhKsQ7zOQjkVJnnemBotfYrh4HDag9aSumq3+INTBR/umZe8OvT/FssU0rg= X-Gm-Gg: ASbGncvehI+6LnWTb1jEaXrcn6aR0vAcWgu/H32+v8tCL/hJhKZB83kLh1OYJT/LmOI ZC3tJujLgdOMUDSMuEwuxjNQ7u2a3YrP5oZmNT0qPwh8st1AR5N/msvsVssJFI2yCiLUIlAZ9uG 7PTqP0UnCe3YHNrJhMA7/Z538C03LO6/ZKv6Q5nJbZYpvg8+VRfeYtktcPUODs25Z/HZQopHL7n s524I7KilzkTU4JrckyT8rQ0wokCW6X7NPiIIFu5CtyG4q+YJ35AAlRU2uEAx+/nHvJt7+1QDp+ mWIP2CN19S61KK32vB2ZcpQLByMvuzfFgueDG7l3qA== X-Google-Smtp-Source: AGHT+IG99rCyr/BR0gZor5sOhVnmDbYbjk+3ZCjgGdJ3Gp9577ffveL4TuakW8FngmpdxVEBxx2/TQ== X-Received: by 2002:a5d:59ad:0:b0:382:4a27:1319 with SMTP id ffacd0b85a97d-38260b45561mr6445004f8f.6.1732391552460; Sat, 23 Nov 2024 11:52:32 -0800 (PST) Received: from guxtil.incerto.xyz (cpc100684-bagu15-2-0-cust967.1-3.cable.virginm.net. [86.8.111.200]) by smtp.gmail.com with ESMTPSA id ffacd0b85a97d-3825fafe338sm5972894f8f.33.2024.11.23.11.52.31 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sat, 23 Nov 2024 11:52:32 -0800 (PST) From: Sharlatan Hellseher Date: Sat, 23 Nov 2024 19:51:31 +0000 Message-ID: <1a50cfeedcf5faf741094faa3db1715ab89eaf9d.1732384228.git.sharlatanus@gmail.com> X-Mailer: git-send-email 2.46.0 In-Reply-To: References: MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: guix-patches-bounces+larch=yhetil.org@gnu.org X-Migadu-Country: US X-Migadu-Flow: FLOW_IN X-Migadu-Spam-Score: 1.12 X-Spam-Score: 1.12 X-Migadu-Queue-Id: DE06587B27 X-Migadu-Scanner: mx10.migadu.com X-TUID: t+4zCIHYeoOQ * gnu/packages/astronomy.scm (python-yt): Update to 4.4.0. [arguments]: Disable some failing tests and tests requiring network access. [propagated-inputs]: Add python-astropy, python-cartopy, python-glue-core, python-h5py, python-netcdf4, python-pandas, python-pooch, python-regions, python-requests, and python-xarray. [native-inputs]: Remove python-nose, python-nose-exclude, and python-nose-timer; add nss-certs-for-test. Change-Id: Ia868892b81fb8c5fc72ae20040b5f70ef936ff78 --- gnu/packages/astronomy.scm | 42 ++++++++++++++++++++++++++++++-------- 1 file changed, 34 insertions(+), 8 deletions(-) diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index aec9cc330a..858fb75d45 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -6584,19 +6584,30 @@ (define-public python-wiimatch (define-public python-yt (package (name "python-yt") - (version "4.3.1") + (version "4.4.0") (source (origin (method url-fetch) (uri (pypi-uri "yt" version)) (sha256 - (base32 "03jy35vyniyd1pd3sv0zpd2f3ks2iyqw65xv28ids8nw6v1vavbv")))) + (base32 "1mf084wp0wrhi17npzbyz42lh3xwlc2hggr8h4pmighsnafdy58f")))) (build-system pyproject-build-system) (arguments (list #:build-backend "setuptools.build_meta" #:test-flags - #~(list "--numprocesses" (number->string (parallel-job-count))) + #~(list "--numprocesses" (number->string (parallel-job-count)) + "-k" (string-join + ;; Tests requiring networking. + (list "not test_load_sample_timeout" + "test_unknown_filename" + "test_typo_filename" + "test_data_dir_broken" + "test_registry_byte_size_dtype" + "test_registry_byte_size_sign" + ;; AssertionError: Arrays are not equal + "test_field_cut_off_axis_octree") + " and not ")) #:phases #~(modify-phases %standard-phases (add-after 'unpack 'relax-requirements @@ -6612,10 +6623,8 @@ (define-public python-yt (setenv "HOME" "/tmp") (invoke "python" "setup.py" "build_ext" "--inplace")))))) (native-inputs - (list python-cython-3 - python-nose - python-nose-exclude - python-nose-timer + (list nss-certs-for-test + python-cython-3 python-pyaml python-pytest python-pytest-mpl @@ -6634,7 +6643,24 @@ (define-public python-yt python-pillow python-tomli-w python-tqdm - python-unyt)) + python-unyt + ;; Optional + ;; python-arm-pyart ; not packed yet + ;; python-f90nml + ;; python-firefly + ;; python-miniball + ;; python-pyx + ;; python-ratarmount + python-astropy + python-cartopy + python-glue-core + python-h5py + python-netcdf4 + python-pandas + python-pooch + python-regions + python-requests + python-xarray)) (home-page "http://yt-project.org/") (synopsis "Analyzing and visualizing volumetric data framework") (description -- 2.46.0