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charset=utf-8 Content-Transfer-Encoding: quoted-printable Message-ID: <171887340881.9.8063638923661902508.359656723@mawumag.com> X-SimpleLogin-Type: Reply X-SimpleLogin-EmailLog-ID: 359656734 X-SimpleLogin-Want-Signing: yes X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-to: guix@mawumag.com X-ACL-Warn: , guix--- via Guix-patches From: guix--- via Guix-patches via Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: guix-patches-bounces+larch=yhetil.org@gnu.org X-Migadu-Country: US X-Migadu-Flow: FLOW_IN X-Migadu-Queue-Id: EAAFC64F09 X-Migadu-Scanner: mx13.migadu.com X-Migadu-Spam-Score: -5.86 X-Spam-Score: -5.86 X-TUID: 8Vw0b3BOYU+I Change-Id: Ide92878258511b3daf4e56d5faa94d190fdee62f --- gnu/packages/bioinformatics.scm | 38 +++++++++++++++++++++++++++++++++ 1 file changed, 38 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.= scm index cdda029809..37fa1727cb 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4443,6 +4443,44 @@ (define-public python-mudata omics data.") (license license:bsd-3))) =20 +(define-public python-mofapy2 + (package + (name "python-mofapy2") + (version "0.7.1") + (source + (origin + ;; The tarball from PyPi doesn't include tests. + (method git-fetch) + (uri (git-reference + (url "https://github.com/bioFAM/mofapy2") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0ahhnqk6gjrhyq286mrd5n7mxcv8l6040ffsawbjx9maqx8wbam0")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-before 'check 'disable-failing-tests + (lambda _ + ;; cupy is an optional dependency, which + ;; itself has nonfree dependencies (CUDA) + (delete-file "mofapy2/notebooks/test_cupy.py")))))) + (propagated-inputs (list python-anndata + python-pandas + python-scipy + python-numpy + python-scikit-learn + python-h5py)) + (native-inputs (list python-poetry-core + python-pytest)) + (home-page "https:/biofam.github.io/MOFA2/") + (synopsis "Multi-omics factor analysis") + (description "Multi-omics factor analysis.") + (license license:lgpl3))) + (define-public python-pyega3 (deprecated-package "python-pyega3" python-ega-download-client)) =20 --=20 2.45.1