From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp1.migadu.com ([2001:41d0:303:e224::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms13.migadu.com with LMTPS id uH8tGJo1LmcbRwEA62LTzQ:P1 (envelope-from ) for ; Fri, 08 Nov 2024 16:00:26 +0000 Received: from aspmx1.migadu.com ([2001:41d0:303:e224::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp1.migadu.com with LMTPS id uH8tGJo1LmcbRwEA62LTzQ (envelope-from ) for ; Fri, 08 Nov 2024 17:00:26 +0100 X-Envelope-To: larch@yhetil.org Authentication-Results: aspmx1.migadu.com; dkim=pass header.d=debbugs.gnu.org header.s=debbugs-gnu-org header.b="lbgpa/kk"; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=Fu0Vh0WA; dmarc=fail reason="SPF not aligned (relaxed), DKIM not aligned (strict)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" ARC-Seal: i=1; s=key1; d=yhetil.org; t=1731081626; a=rsa-sha256; cv=none; b=Mqbu+lgj3+zeZmwIuwzvFNLrz1AuoSrx3KkkCf39/S86+H3lb86UsnV8Qt570aJV6HpmdQ IJO5Lfr3eUdy+C/zmwOEkmEseRV44BG5LHAaqAOJ1JSNmniVFT3PqtAaCCAM3lUdpJ4xiB QyELBrw17PmWoQDpYHeS+SCYuJswBct8iqiCpA7hcuiE5YGNg/j4w5+YZio5J6IN/IYFcE rejsWeuCgzEJjc6S3GAPzt82BO5TBZ406sT8xcULDNbazP8MX9Ifrp9O8hm6XDR9PJMN8m AJY4iWE7Nbm7g4eHnhi1NBKfjCp62TCZschf4PnJlcXGdZQx3VdUvMMCbeo/HA== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=pass header.d=debbugs.gnu.org header.s=debbugs-gnu-org header.b="lbgpa/kk"; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=Fu0Vh0WA; dmarc=fail reason="SPF not aligned (relaxed), DKIM not aligned (strict)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1731081626; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-type:content-type: content-transfer-encoding:content-transfer-encoding:resent-cc: resent-from:resent-sender:resent-message-id:list-id:list-help: list-unsubscribe:list-subscribe:list-post:dkim-signature; bh=6FqAYlEhhYdY3uWbohm3+7VpzrepynczAm10sRkUBk8=; b=NDprTL6Wmxp7SMjN+iBHLkQPrZdeL2z3fsmyjIwWcEOe046mjlxPJsAXxYCnLTNnnw+5KF 8TE00tM2d0tlq8LLR0b6MP2BtTcHbZH5nEAEe8GEOE9F9z10YHtMlwFIXJJm5UOdZWFW91 TOJAhQ0NWJQxbwVAYY70/TiMl16Lp/YhvntCQ1Z8SJrwySc1HpBNWOSVNhtMgDLsJeAg8p D/ie3rkDKSxHKC/tiC0BAbKrDDJy+rK0cf/eKe0xr09R9+tofr8jQG9q0uKPeNi1kNj6zQ X7RcIGM4Qzgvg/9j6dPvGDShqjLrWNbCPpMOxnTbZfeb5raIwRrP9ObnvVMddQ== Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 33C7D1A2DF for ; Fri, 08 Nov 2024 17:00:26 +0100 (CET) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1t9RP4-00015X-05; Fri, 08 Nov 2024 11:00:06 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1t9RP1-00013o-K8 for guix-patches@gnu.org; Fri, 08 Nov 2024 11:00:03 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1t9RP1-0008UB-AV for guix-patches@gnu.org; Fri, 08 Nov 2024 11:00:03 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debbugs.gnu.org; s=debbugs-gnu-org; h=MIME-Version:Date:From:To:Subject; bh=6FqAYlEhhYdY3uWbohm3+7VpzrepynczAm10sRkUBk8=; b=lbgpa/kkQ4s+qTh7Q8dXZw5U55X2jMo6K+R/5XKOPh/TNmrkQDNliyXuZRiFJ6ElnS24ozvAcUdPwJoalrAt85qzEaxzd/qS+C9cn0C0sD0xoV25eJufIAbZCCBiRl8l7auNmP9dOtKFe25j/9gcHuJEBUZ9TbAHUJlMD3lX4h0R7ZPRaf76JxfgMrTAbL2a+GC8jc+q21HMmKQ64tT8Kp2hwghJb/r3WtBgmMQFT2uWtlLbDMr9W8ImS4OWxpyIEM0JSYH2qulnR9W8J7kn92rc7ckmqpwZtjj4YQVjxZ31pEFHt922dhM1ka4xRSYrWo2GvS/oAs3GwoTA0gUYwA==; Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1t9RP0-0005Ck-Ij for guix-patches@gnu.org; Fri, 08 Nov 2024 11:00:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#74262] [PATCH] gnu: Add python-bs4. Resent-From: Navid Afkhami Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 08 Nov 2024 16:00:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 74262 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 74262@debbugs.gnu.org Cc: Navid Afkhami X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.173108155919923 (code B ref -1); Fri, 08 Nov 2024 16:00:02 +0000 Received: (at submit) by debbugs.gnu.org; 8 Nov 2024 15:59:19 +0000 Received: from localhost ([127.0.0.1]:51794 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1t9ROJ-0005BG-Cr for submit@debbugs.gnu.org; Fri, 08 Nov 2024 10:59:19 -0500 Received: from lists.gnu.org ([209.51.188.17]:53864) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1t9ROH-0005B9-D2 for submit@debbugs.gnu.org; Fri, 08 Nov 2024 10:59:18 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1t9ROH-0000sq-6Q for guix-patches@gnu.org; Fri, 08 Nov 2024 10:59:17 -0500 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1t9ROE-0008QI-62 for guix-patches@gnu.org; Fri, 08 Nov 2024 10:59:16 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1731081548; x=1732895949; bh=EtZiOjq/BuKXUTV qbLzI04Gylnce81S4nNInZrqNTcs=; b=Fu0Vh0WA6Rjr95s8l6gglSmORJkO/sq AGjgeL8gdt5D+VqZVHNaGwBH7YvcTBtDdE6NuDW9CCgNwBnrv2xVcAqHKON6j5lK cQqyCjnZOX6csrSx5ldOJ1gPoV/Ao/GNGS2leNxvHFA4esS8M6mnuBXqnUNTglX8 M6imntyyvv5Y= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id B5A07300199 for ; Fri, 8 Nov 2024 16:59:08 +0100 (CET) Received: from localhost (141.80.121.182) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.11; Fri, 8 Nov 2024 16:59:07 +0100 From: Navid Afkhami Date: Fri, 8 Nov 2024 15:59:02 +0000 Message-ID: <0c965caea30072d37c2f8aa6877746bf03fbd18f.1731081542.git.navid.afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.43.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.121.182] X-ClientProxiedBy: SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3223-9.1.2019-28784.000 X-TM-AS-Result: No-10--6.600400-5.000000 X-TMASE-MatchedRID: a3KJLn6RIiJYhP20o6vOMFY9XYa1m8xAJ3y+iqiko29rIVA3IGfCC6DE DQa+uiKUfxo+wwDBGZpc9Z7WzZ2cYI30s+MAW15xYBS4BO08ckMY2XXzN4WMXNsyaR1FJJObdPQ 2JTiaKeJT0l6jKl8H3yPJ2hEK0g1YlPPgJFcp0ATk+QJ4zu017VHdSSkRFiZk8sQPx9xTib5jc9 9KY0Ed8qODSWu0oxbKJP/2DvkXaK9aOxpgjiWHdVV0twgLfg8YpWu923L0/V4fIdr0szAYstkaW 1ehZGsruCGgQyYn3BdoSnGOR05xwj6Qrn3xh/cy X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--6.600400-5.000000 X-TMASE-Version: SMEX-14.0.0.3223-9.1.2019-28784.000 X-TM-SNTS-SMTP: 3077137E0C31E98F8F3162DEF2BBB0FE192C796D0B193565EFE4EA2FCF19174A2000:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, RCVD_IN_VALIDITY_CERTIFIED_BLOCKED=0.001, RCVD_IN_VALIDITY_RPBL_BLOCKED=0.001, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: guix-patches-bounces+larch=yhetil.org@gnu.org X-Migadu-Flow: FLOW_IN X-Migadu-Country: US X-Migadu-Spam-Score: 1.63 X-Spam-Score: 1.63 X-Migadu-Queue-Id: 33C7D1A2DF X-Migadu-Scanner: mx12.migadu.com X-TUID: T5qj+2DHsedQ * gnu/packages/bioinformatics.scm (python-bs4): New variable. Change-Id: I69d0a0b6f39977db3419c23b645983da8cb02e7d --- gnu/packages/bioinformatics.scm | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 45c460599f..10c975297b 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4557,6 +4557,25 @@ (define-public bwa-meth off-target reads for a capture method that targets CpG-rich region.") (license license:expat))) +(define-public python-bs4 + (package + (name "python-bs4") + (version "0.0.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "bs4" version)) + (sha256 + (base32 "099rcncbfhzykzizfmabsl0gbbbbzs1swys149vi5zjhiz2qb1m4")))) + (build-system pyproject-build-system) + (arguments (list #:tests? #f)) ;There are no tests + (propagated-inputs (list python-beautifulsoup4 + python-hatchling)) + (home-page "https://pypi.org/project/bs4") + (synopsis "Dummy package for Python Beautifulsoup4") + (description "This is a dummy package for Python Beautifulsoup4.") + (license license:expat))) + (define-public python-bx-python (package (name "python-bx-python") base-commit: 2a6d96425eea57dc6dd48a2bec16743046e32e06 prerequisite-patch-id: 8f31c5ea3685b59fb6907a9582c0ca537c9c38bd prerequisite-patch-id: e9f28e6ac20c9572b3cc53ab09c4083161bfdf8d prerequisite-patch-id: dc854398543782a2f94811e4991533c4beec4e10 prerequisite-patch-id: 5461c1696000d75efb93f8415f974dd402577e6d -- 2.43.0