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Change-Id: Icf2a7dd9d637d14d835c7a428093ba8daf25e25a --- gnu/packages/bioinformatics.scm | 45 +++++++++++++++++++++++++++++++++ 1 file changed, 45 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index eae0a29b90..56188309a8 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -22662,6 +22662,51 @@ (define-public r-catch value of physical insulation between neighboring domains.") (license license:gpl2+)))) +(define-public r-spacexr + (let ((commit "0a0861e3d1e16014a20e9b743d0e19d3b42231f3") + (revision "1")) + (package + (name "r-spacexr") + (version (git-version "2.2.1" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/dmcable/spacexr") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0hqrllzq2hi6dsr8nykn1yp7s3rcbjrv3m624b61n4nxnzza458a")))) + (properties `((upstream-name . "spacexr"))) + (build-system r-build-system) + (propagated-inputs (list r-compquadform + r-data-table + r-doparallel + r-dplyr + r-fields + r-foreach + r-ggplot2 + r-knitr + r-locfdr + r-matrix + r-metafor + r-mgcv + r-pals + r-quadprog + r-readr + r-reshape2 + r-rfast + r-rmarkdown + r-tibble)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/dmcable/spacexr") + (synopsis + "Cell type identification and differential expression in spatial transcriptomics") + (description + "This package is used for cell type identification in spatial transcriptomics. +It also handles cell type-specific differential expression.") + (license license:gpl3)))) + (define-public r-spectre (let ((commit "f6648ab3eb9499300d86502b5d60ec370ae9b61a") (revision "1")) base-commit: 58faaf4eaadafa09a97ab31103eb54bd2076a699 prerequisite-patch-id: dc2f4964edf0016b1e572e9f41129606c4fb3132 prerequisite-patch-id: 4ce0ef474ba0015be3d30c7eec8f094098beaec7 -- 2.34.1