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, List-Archive: List-Post: List-Help: List-Subscribe: , Reply-to: reza X-ACL-Warn: , reza via Guix-patches From: reza via Guix-patches via Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: guix-patches-bounces+larch=yhetil.org@gnu.org X-Migadu-Flow: FLOW_IN X-Migadu-Country: US X-Migadu-Scanner: mx10.migadu.com X-Migadu-Spam-Score: -6.21 X-Spam-Score: -6.21 X-Migadu-Queue-Id: 3A5659936E X-TUID: E2N6tlwKQpIw * gnu/packages/python-science.scm (python-pyvista): Update to 0.44.2=0D=0A= [origin]: Update to 0.44.2=0D=0A [build-system]: Change to pyproject-b= uild-system.=0D=0A [native-inputs]: Add native-inputs for testing.=0D=0A= [modify-phases]: Enable sanity-check and check phase, disable failing t= ests=0D=0A and vtk dependency check and redirect $HOME variable.=0D=0A=0D= =0AChange-Id: I4293e99be12d096e639e47b8066116ba519909a8=0D=0A---=0D=0A gn= u/packages/python-science.scm | 133 +++++++++++++++++++++++++++++---=0D=0A= 1 file changed, 121 insertions(+), 12 deletions(-)=0D=0A=0D=0Adiff --git= a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm=0D=0A= index fe146717ce..5326284ce4 100644=0D=0A--- a/gnu/packages/python-scienc= e.scm=0D=0A+++ b/gnu/packages/python-science.scm=0D=0A@@ -2759,10 +2759,8= @@ (define-public python-plotnine=0D=0A (define-public python-pyvista=0D= =0A (package=0D=0A (name "python-pyvista")=0D=0A- (version "0.42= =2E3")=0D=0A+ (version "0.44.2")=0D=0A (source=0D=0A- ;; The P= yPI tarball does not contain the tests.=0D=0A- ;; (However, we don't = yet actually run the tests.)=0D=0A (origin=0D=0A (method git-= fetch)=0D=0A (uri (git-reference=0D=0A@@ -2770,8 +2768,8 @@ (defin= e-public python-pyvista=0D=0A (commit (string-append "v" ver= sion))))=0D=0A (file-name (git-file-name name version))=0D=0A = (sha256=0D=0A- (base32 "1qxq0y0hc72hb60w3qq48fma8l6ffz7bdm75ymn= 1020bvfqrm1s4"))))=0D=0A- (build-system python-build-system)=0D=0A+ = (base32 "0lnh4cvf6wld7hm293015d80ny0vnsk96ckfvc2crzd1b79ch1v5"))))=0D= =0A+ (build-system pyproject-build-system)=0D=0A (propagated-input= s=0D=0A (list python-imageio=0D=0A python-matplotlib=0D=0A= @@ -2781,16 +2779,127 @@ (define-public python-pyvista=0D=0A p= ython-pooch=0D=0A python-scooby=0D=0A vtk))=0D=0A+ = ;; packages needed for testing=0D=0A+ (native-inputs (list python-p= ytest=0D=0A+=09=09=09 python-scipy=0D=0A+=09=09=09 python-ipython=0D=0A+=09= =09=09 python-trimesh=0D=0A+ python-tqdm))=0D=0A = (arguments=0D=0A '(#:phases=0D=0A (modify-phases %standar= d-phases=0D=0A- ;; Disable tests for now because they require sev= eral modules=0D=0A- ;; currently unpackaged in Guix.=0D=0A- = (delete 'check)=0D=0A- ;; Disable the sanity check, which fail= s with the following error:=0D=0A- ;;=0D=0A- ;; ...chec= king requirements: ERROR: pyvista=3D=3D0.42.3 DistributionNotFound(Requir= ement.parse('vtk'), {'pyvista'})=0D=0A- (delete 'sanity-check))))= =0D=0A+=09 ;; vtk check fails in sanity-check, comment out=0D=0A+=09 (add= -after 'unpack 'patch-pyproject=0D=0A+=09 (lambda _=0D=0A+=09 (subs= titute* "pyproject.toml"=0D=0A+=09 (("'vtk<9\\.4\\.0'," all) (strin= g-append "#" all)))))=0D=0A+=09 (add-after 'unpack 'fix-failing-tests=0D=0A= +=09 (lambda _=0D=0A+ (rename-file "tests/plotting/test_cha= rts.py" "tests/plotting/_test_charts.py")=0D=0A+=09 (rename-file "tes= ts/examples/test_download_files.py" "tests/examples/_test_download_files.= py")=0D=0A+=09 (rename-file "tests/examples/test_downloads.py" "tests= /examples/_test_downloads.py")=0D=0A+ (rename-file "tests/plo= tting/test_texture.py" "tests/plotting/_test_texture.py")=0D=0A+=09 (= substitute* "tests/plotting/test_plotting.py"=0D=0A+=09 (("\"\"\"De= termine if using mesa.\"\"\"" all)=0D=0A+=09=09(string-append all "\n = return False")))=0D=0A+=09 (substitute* "tests/test_meshio.py"=0D=0A+= =09 (("cow =3D .*$" all) (string-append "#" all "\n"))=0D=0A+=09 = ((", cow") ""))=0D=0A+=09 (substitute* "tests/core/test_dataset.p= y"=0D=0A+=09 (("test_partition") 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"_test_add_= multiple")=0D=0A+=09 (("test_plot_return_img_without_cpos") "_test_= plot_return_img_without_cpos")=0D=0A+=09 (("test_plot_return_img_wi= th_cpos") "_test_plot_return_img_with_cpos")=0D=0A+=09 (("test_only= _screenshots_flag") "_test_only_screenshots_flag"))=0D=0A+=09 (substi= tute* "tests/plotting/test_plotting_utilities.py"=0D=0A+=09 (("test= _gif_reader") "_test_gif_reader"))=0D=0A+=09 (substitute* "tests/plot= ting/test_render_window_interactor.py"=0D=0A+=09 (("test_timer") "_= test_timer")=0D=0A+=09 (("test_add_timer_event") "_test_add_timer_e= vent")=0D=0A+=09 (("test_interpolate") "_test_interpolate"))=0D=0A+= =09 (substitute* "tests/plotting/test_renderer.py"=0D=0A+=09 ((= "test_legend_.*$" all) (string-append "_" all)))=0D=0A+=09 (substitut= e* "tests/plotting/test_theme.py"=0D=0A+=09 (("test_box_axes") "_te= st_box_axes")=0D=0A+=09 (("test_load_theme") "_test_load_theme")=0D= =0A+=09 (("test_save_before_close_callback") "_test_save_before_clo= se_callback")=0D=0A+=09 (("test_user_logo") "_test_user_logo"))=0D=0A= +=09 (substitute* "tests/core/test_geometric_sources.py"=0D=0A+=09 = (("test_translate_direction_collinear") "_test_translate_direction_co= llinear"))=0D=0A+=09 (substitute* "tests/examples/test_dataset_loader= =2Epy"=0D=0A+=09 (("test_dataset_loader_one_file") "_test_dataset_l= oader_one_file")=0D=0A+=09 (("test_dataset_loader_two_files_one_loa= dable") "_test_dataset_loader_two_files_one_loadable")=0D=0A+=09 ((= "test_dataset_loader_two_files_both_loadable") "_test_dataset_loader_two_= files_both_loadable")=0D=0A+=09 (("test_dataset_loader_cubemap") "_= test_dataset_loader_cubemap")=0D=0A+=09 (("test_dataset_loader_dico= m") "_test_dataset_loader_dicom")=0D=0A+=09 (("test_dataset_loader_= from_nested_files_and_directory") "_test_dataset_loader_from_nested_files= _and_directory")=0D=0A+=09 (("test_dataset_loader_from_nested_multi= block") "_test_dataset_loader_from_nested_multiblock")=0D=0A+=09 ((= "test_load_dataset_no_reader") "_test_load_dataset_no_reader"))=0D=0A+=09= (substitute* "tests/core/test_reader.py"=0D=0A+=09 (("test_ens= ightreader_arrays") "_test_ensightreader_arrays")=0D=0A+=09 (("test= _ensightreader_timepoints") "_test_ensightreader_timepoints")=0D=0A+=09 = (("test_ensightreader_time_sets") "_test_ensightreader_time_sets")=0D= =0A+=09 (("test_dcmreader") "_test_dcmreader")=0D=0A+=09 (("t= est_objreader") "_test_objreader")=0D=0A+=09 (("test_stlreader") "_= test_stlreader")=0D=0A+=09 (("test_tecplotreader") "_test_tecplotre= ader")=0D=0A+=09 (("test_byureader") "_test_byureader")=0D=0A+=09 = (("test_facetreader") "_test_facetreader")=0D=0A+=09 (("test_p= lot3dmetareader") "_test_plot3dmetareader")=0D=0A+=09 (("test_multi= blockplot3dreader") "_test_multiblockplot3dreader")=0D=0A+=09 (("te= st_binarymarchingcubesreader") "_test_binarymarchingcubesreader")=0D=0A+=09= (("test_pvdreader") "_test_pvdreader")=0D=0A+=09 (("test_pvd= reader_no_time_group") "_test_pvdreader_no_time_group")=0D=0A+=09 (= ("test_pvdreader_no_part_group") "_test_pvdreader_no_part_group")=0D=0A+=09= (("test_openfoamreader_arrays_time") "_test_openfoamreader_arrays_= time")=0D=0A+=09 (("test_openfoamreader_active_time") "_test_openfo= amreader_active_time")=0D=0A+=09 (("test_openfoamreader_read_data_t= ime_value") "_test_openfoamreader_read_data_time_value")=0D=0A+=09 = (("test_openfoamreader_read_data_time_point") "_test_openfoamreader_read_= data_time_point")=0D=0A+=09 (("test_openfoam_skip_zero_time") "_tes= t_openfoam_skip_zero_time")=0D=0A+=09 (("test_openfoam_cell_to_poin= t_default") "_test_openfoam_cell_to_point_default")=0D=0A+=09 (("te= st_openfoam_patch_arrays") "_test_openfoam_patch_arrays")=0D=0A+=09 = (("test_openfoam_case_type") "_test_openfoam_case_type")=0D=0A+=09 = (("test_read_cgns") "_test_read_cgns")=0D=0A+=09 (("test_bmpreader= ") "_test_bmpreader")=0D=0A+=09 (("test_demreader") "_test_demreade= r")=0D=0A+=09 (("test_jpegreader") "_test_jpegreader")=0D=0A+=09 = (("test_meta_image_reader") "_test_meta_image_reader")=0D=0A+=09 = (("test_nifti_reader") "_test_nifti_reader")=0D=0A+=09 (("test_nr= rd_reader") "_test_nrrd_reader")=0D=0A+=09 (("test_png_reader") "_t= est_png_reader")=0D=0A+=09 (("test_pnm_reader") "_test_pnm_reader")= =0D=0A+=09 (("test_slc_reader") "_test_slc_reader")=0D=0A+=09 = (("test_tiff_reader") "_test_tiff_reader")=0D=0A+=09 (("test_hdr_r= eader") "_test_hdr_reader")=0D=0A+=09 (("test_avsucd_reader") "_tes= t_avsucd_reader")=0D=0A+=09 (("test_hdf_reader") "_test_hdf_reader"= )=0D=0A+=09 (("test_xdmf_reader") "_test_xdmf_reader")=0D=0A+=09 = (("test_fluentcffreader") "_test_fluentcffreader")=0D=0A+=09 ((= "test_gambitreader") "_test_gambitreader")=0D=0A+=09 (("test_gaussi= an_cubes_reader") "_test_gaussian_cubes_reader")=0D=0A+=09 (("test_= gesignareader") "_test_gesignareader")=0D=0A+=09 (("test_pdbreader"= ) "_test_pdbreader")=0D=0A+=09 (("test_particle_reader") "_test_par= ticle_reader")=0D=0A+=09 (("test_prostar_reader") "_test_prostar_re= ader"))))=0D=0A+=09 ;; test phase writes files to $HOME=0D=0A+=09 (add-be= fore 'check 'redirect-HOME=0D=0A+=09 (lambda _=0D=0A+=09 (setenv "H= OME" "/tmp"))))))=0D=0A (home-page "https://docs.pyvista.org/")=0D=0A= (synopsis "3D plotting and mesh analysis through VTK")=0D=0A (de= scription=0D=0A=0D=0Abase-commit: 20b1613484f512649f919d89285e98199859249= 7=0D=0A--=20=0D=0A2.46.0=0D=0A=0D=0A