Re: Compilation failure on very large module

[Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>]

Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> writes:

> I have a very large Guix module with almost all packages from CRAN.
> Unfortunately, I cannot compile it.  Guile 2.2.2 runs out of memory and
> even Guile 2.0 crashes with “list too long”.

Here’s the crash with Guile 2.2.  I’ve added the module to the list of
modules that should be compiled and ran “make”.  You can see that there
are a couple of undefined variables, but I don’t think this should lead
to a crash.

--8<---------------cut here---------------start------------->8---
make
 cd . && /bin/sh /home/rwurmus/code/guix/build-aux/missing automake-1.15 --gnu Makefile
configure.ac:23: warning: The 'AM_PROG_MKDIR_P' macro is deprecated, and its use is discouraged.
configure.ac:23: You should use the Autoconf-provided 'AC_PROG_MKDIR_P' macro instead,
configure.ac:23: and use '$(MKDIR_P)' instead of '$(mkdir_p)'in your Makefile.am files.
Makefile.am:488: warning: AM_GNU_GETTEXT used but 'po' not in SUBDIRS
 cd . && /bin/sh ./config.status Makefile depfiles
config.status: creating Makefile
config.status: executing depfiles commands
make  all-recursive
make[1]: Entering directory '/home/rwurmus/code/guix'
Making all in po/guix
make[2]: Entering directory '/home/rwurmus/code/guix/po/guix'
make[2]: Leaving directory '/home/rwurmus/code/guix/po/guix'
Making all in po/packages
make[2]: Entering directory '/home/rwurmus/code/guix/po/packages'
make[2]: Leaving directory '/home/rwurmus/code/guix/po/packages'
make[2]: Entering directory '/home/rwurmus/code/guix'
Compiling Scheme modules...
  LOAD     (gnu packages cran)
;;; note: source file ./gnu/packages/tex.scm
;;;       newer than compiled /home/rwurmus/code/guix/gnu/packages/tex.go
WARNING: (gnu packages cran): `expat' imported from both (guix licenses) and (gnu packages xml)
WARNING: (gnu packages cran): `expat' imported from both (gnu packages xml) and (guix licenses)
  LOAD     (gnu packages tex)
  GUILEC   gnu/packages/cran.go
  GUILEC   gnu/packages/tex.go
WARNING: (gnu packages cran): `expat' imported from both (guix licenses) and (gnu packages xml)
WARNING: (gnu packages cran): `expat' imported from both (gnu packages xml) and (guix licenses)
gnu/packages/cran.scm:650:12: warning: possibly unbound variable `zenity'
gnu/packages/cran.scm:708:12: warning: possibly unbound variable `libjpeg'
gnu/packages/cran.scm:727:12: warning: possibly unbound variable `libpng'
gnu/packages/cran.scm:889:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:4029:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:5112:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:5112:6: warning: possibly unbound variable `r-suprahex'
gnu/packages/cran.scm:5139:6: warning: possibly unbound variable `r-suprahex'
gnu/packages/cran.scm:5884:6: warning: possibly unbound variable `atk'
gnu/packages/cran.scm:5884:6: warning: possibly unbound variable `cairo'
gnu/packages/cran.scm:5884:6: warning: possibly unbound variable `glib'
gnu/packages/cran.scm:5884:6: warning: possibly unbound variable `gtk+'
gnu/packages/cran.scm:5884:6: warning: possibly unbound variable `pango'
gnu/packages/cran.scm:5889:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:5909:12: warning: possibly unbound variable `cairo'
gnu/packages/cran.scm:5910:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:5955:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:8239:6: warning: possibly unbound variable `mariadb'
gnu/packages/cran.scm:8239:6: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:8243:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:8690:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:8714:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:9572:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:9726:23: warning: possibly unbound variable `r-snpstats'
gnu/packages/cran.scm:10456:12: warning: possibly unbound variable `libwebp'
gnu/packages/cran.scm:10457:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:11519:12: warning: possibly unbound variable `svmlight'
gnu/packages/cran.scm:11723:12: warning: possibly unbound variable `fftw'
gnu/packages/cran.scm:11724:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:11825:12: warning: possibly unbound variable `libsndfile'
gnu/packages/cran.scm:12544:12: warning: possibly unbound variable `gtk-pandoc'
gnu/packages/cran.scm:12670:12: warning: possibly unbound variable `gmp'
gnu/packages/cran.scm:13459:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:14840:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:16300:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:18982:12: warning: possibly unbound variable `gmp'
gnu/packages/cran.scm:22472:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:23444:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:23958:6: warning: possibly unbound variable `r-snpstats'
gnu/packages/cran.scm:25927:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:26146:6: warning: possibly unbound variable `exiftool'
gnu/packages/cran.scm:26146:6: warning: possibly unbound variable `libav'
gnu/packages/cran.scm:26300:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:26324:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:26614:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:26777:6: warning: possibly unbound variable `r-qpgraph'
gnu/packages/cran.scm:27669:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:30654:12: warning: possibly unbound variable `exiftool'
gnu/packages/cran.scm:30939:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:31196:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:31218:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:31690:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:32063:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:32361:12: warning: possibly unbound variable `tensorflow'
gnu/packages/cran.scm:32604:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:33227:12: warning: possibly unbound variable `gmp'
gnu/packages/cran.scm:33378:6: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:33430:6: warning: possibly unbound variable `r-cntools'
gnu/packages/cran.scm:33948:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:34851:6: warning: possibly unbound variable `libpng'
gnu/packages/cran.scm:34851:6: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:34854:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:34984:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:35343:6: warning: possibly unbound variable `r-chopsticks'
gnu/packages/cran.scm:35690:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:35693:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:35909:12: warning: possibly unbound variable `git'
gnu/packages/cran.scm:35909:12: warning: possibly unbound variable `svn'
gnu/packages/cran.scm:36323:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:36593:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:36613:23: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:37493:6: warning: possibly unbound variable `r-survcomp'
gnu/packages/cran.scm:38562:6: warning: possibly unbound variable `r-fabia'
gnu/packages/cran.scm:39699:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:39772:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:39801:6: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:39922:6: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:42683:6: warning: possibly unbound variable `atk'
gnu/packages/cran.scm:42683:6: warning: possibly unbound variable `cairo'
gnu/packages/cran.scm:42683:6: warning: possibly unbound variable `glib'
gnu/packages/cran.scm:42683:6: warning: possibly unbound variable `gtk+'
gnu/packages/cran.scm:42683:6: warning: possibly unbound variable `pango'
gnu/packages/cran.scm:42689:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:42714:12: warning: possibly unbound variable `gtk+'
gnu/packages/cran.scm:42716:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:43376:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:43935:6: warning: possibly unbound variable `r-qvalue'
gnu/packages/cran.scm:45315:12: warning: possibly unbound variable `mpi'
gnu/packages/cran.scm:45364:6: warning: possibly unbound variable `r-cma'
gnu/packages/cran.scm:45576:12: warning: possibly unbound variable `ffmpeg'
gnu/packages/cran.scm:45694:23: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:46975:12: warning: possibly unbound variable `fftw'
gnu/packages/cran.scm:47344:6: warning: possibly unbound variable `r-mait'
gnu/packages/cran.scm:47344:6: warning: possibly unbound variable `r-xcms'
gnu/packages/cran.scm:47651:6: warning: possibly unbound variable `r-massspecwavelet'
gnu/packages/cran.scm:48858:12: warning: possibly unbound variable `fftw'
gnu/packages/cran.scm:48862:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:50057:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:51891:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:52289:12: warning: possibly unbound variable `libsodium'
gnu/packages/cran.scm:52290:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:52654:12: warning: possibly unbound variable `gmp'
gnu/packages/cran.scm:52654:12: warning: possibly unbound variable `mpfr'
gnu/packages/cran.scm:52773:6: warning: possibly unbound variable `r-snpstats'
gnu/packages/cran.scm:52919:6: warning: possibly unbound variable `r-snpstats'
gnu/packages/cran.scm:54187:6: warning: possibly unbound variable `r-qvalue'
gnu/packages/cran.scm:54830:23: warning: possibly unbound variable `r-ebimage'
gnu/packages/cran.scm:55584:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:56311:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:56814:6: warning: possibly unbound variable `r-qpgraph'
gnu/packages/cran.scm:57595:6: warning: possibly unbound variable `r-phyloseq'
gnu/packages/cran.scm:58251:6: warning: possibly unbound variable `libpng'
gnu/packages/cran.scm:58251:6: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:58251:6: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:58258:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:59103:6: warning: possibly unbound variable `none'
gnu/packages/cran.scm:59103:6: warning: possibly unbound variable `openbugs'
gnu/packages/cran.scm:59103:6: warning: possibly unbound variable `winbugs'
gnu/packages/cran.scm:59699:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:60371:6: warning: possibly unbound variable `r-copynumber'
gnu/packages/cran.scm:60617:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:60639:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:60688:6: warning: possibly unbound variable `r-qvalue'
gnu/packages/cran.scm:60688:6: warning: possibly unbound variable `r-widgettools'
gnu/packages/cran.scm:61293:12: warning: possibly unbound variable `libtiff'
gnu/packages/cran.scm:61293:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:61314:12: warning: possibly unbound variable `libtiff'
gnu/packages/cran.scm:61934:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:63700:12: warning: possibly unbound variable `ghc-pandoc'
gnu/packages/cran.scm:64430:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:64859:6: warning: possibly unbound variable `libjpeg'
gnu/packages/cran.scm:64859:6: warning: possibly unbound variable `libpng'
gnu/packages/cran.scm:65500:12: warning: possibly unbound variable `gmp'
gnu/packages/cran.scm:67559:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:67579:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:67580:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:68270:12: warning: possibly unbound variable `ghostscript'
gnu/packages/cran.scm:68459:6: warning: possibly unbound variable `r-snpstats'
gnu/packages/cran.scm:68487:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:68975:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:69514:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:70569:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:70631:12: warning: possibly unbound variable `librsvg2'
gnu/packages/cran.scm:70632:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:70701:6: warning: possibly unbound variable `tktable'
gnu/packages/cran.scm:71092:12: warning: possibly unbound variable `ghc-pandoc'
gnu/packages/cran.scm:71190:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:71547:6: warning: possibly unbound variable `r-qvalue'
gnu/packages/cran.scm:71809:6: warning: possibly unbound variable `r-survcomp'
gnu/packages/cran.scm:71902:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:72613:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:72702:6: warning: possibly unbound variable `tktable'
gnu/packages/cran.scm:73249:12: warning: possibly unbound variable `qgis'
gnu/packages/cran.scm:73280:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:73306:6: warning: possibly unbound variable `arcgis'
gnu/packages/cran.scm:73306:6: warning: possibly unbound variable `windows'
gnu/packages/cran.scm:73500:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:73822:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:74155:12: warning: possibly unbound variable `libpq'
gnu/packages/cran.scm:74161:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:75887:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:76026:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:76454:6: warning: possibly unbound variable `r-ebimage'
gnu/packages/cran.scm:77188:6: warning: possibly unbound variable `r-beadarray'
gnu/packages/cran.scm:77724:12: warning: possibly unbound variable `netlogo'
gnu/packages/cran.scm:78486:12: warning: possibly unbound variable `mongodb'
gnu/packages/cran.scm:78730:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:79053:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:79372:6: warning: possibly unbound variable `libreoffice'
gnu/packages/cran.scm:79372:6: warning: possibly unbound variable `python-uno'
gnu/packages/cran.scm:79731:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:80147:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:80149:6: warning: possibly unbound variable `r-chopsticks'
gnu/packages/cran.scm:80288:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:80615:6: warning: possibly unbound variable `bwidget'
gnu/packages/cran.scm:80615:6: warning: possibly unbound variable `img'
gnu/packages/cran.scm:80615:6: warning: possibly unbound variable `libjpeg'
gnu/packages/cran.scm:80615:6: warning: possibly unbound variable `tktable'
gnu/packages/cran.scm:83631:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:84652:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:84729:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:84731:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:85006:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:86166:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:86257:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:86321:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:86341:12: warning: possibly unbound variable `gmp'
gnu/packages/cran.scm:87948:12: warning: possibly unbound variable `doxygen'
gnu/packages/cran.scm:88868:12: warning: possibly unbound variable `glib2'
gnu/packages/cran.scm:88868:12: warning: possibly unbound variable `pcre'
gnu/packages/cran.scm:88870:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:89009:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:89282:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:91088:23: warning: possibly unbound variable `r-fabia'
gnu/packages/cran.scm:91136:6: warning: possibly unbound variable `r-bicare'
gnu/packages/cran.scm:91136:6: warning: possibly unbound variable `r-fabia'
gnu/packages/cran.scm:91136:6: warning: possibly unbound variable `r-ibbig'
gnu/packages/cran.scm:91136:6: warning: possibly unbound variable `r-rqubic'
gnu/packages/cran.scm:91295:23: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:92367:6: warning: possibly unbound variable `r-chemminer'
gnu/packages/cran.scm:92367:6: warning: possibly unbound variable `r-fmcsr'
gnu/packages/cran.scm:92367:6: warning: possibly unbound variable `r-keggrest'
gnu/packages/cran.scm:92395:12: warning: possibly unbound variable `libbi'
gnu/packages/cran.scm:92610:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:93225:6: warning: possibly unbound variable `libapparmor-dev'
gnu/packages/cran.scm:93225:6: warning: possibly unbound variable `linux'
gnu/packages/cran.scm:93227:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:94613:6: warning: possibly unbound variable `r-marray'
gnu/packages/cran.scm:95446:6: warning: possibly unbound variable `libpng'
gnu/packages/cran.scm:95446:6: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:95446:6: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:95451:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:95493:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:95546:12: warning: possibly unbound variable `openbugs'
gnu/packages/cran.scm:95569:12: warning: possibly unbound variable `mlwin'
gnu/packages/cran.scm:96052:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:97027:12: warning: possibly unbound variable `cmake'
gnu/packages/cran.scm:97330:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:97530:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:99950:23: warning: possibly unbound variable `r-qvalue'
gnu/packages/cran.scm:100579:12: warning: possibly unbound variable `ncbi-blast+'
gnu/packages/cran.scm:100646:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:101657:12: warning: possibly unbound variable `mrtswath'
gnu/packages/cran.scm:101701:23: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:102235:6: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:102321:12: warning: possibly unbound variable `jags'
gnu/packages/cran.scm:103014:12: warning: possibly unbound variable `bwidget'
gnu/packages/cran.scm:103469:6: warning: possibly unbound variable `r-gosemsim'
gnu/packages/cran.scm:103928:12: warning: possibly unbound variable `openbugs'
gnu/packages/cran.scm:104586:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:105510:12: warning: possibly unbound variable `fftw'
gnu/packages/cran.scm:106303:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:106303:6: warning: possibly unbound variable `r-survcomp'
gnu/packages/cran.scm:107088:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:107184:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:107278:12: warning: possibly unbound variable `ghc-pandoc'
gnu/packages/cran.scm:108300:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:108300:6: warning: possibly unbound variable `r-qvalue'
gnu/packages/cran.scm:109103:6: warning: possibly unbound variable `r-lbe'
gnu/packages/cran.scm:109544:6: warning: possibly unbound variable `r-snpstats'
gnu/packages/cran.scm:110548:12: warning: possibly unbound variable `ghostscript'
gnu/packages/cran.scm:112268:6: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:112291:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:112480:6: warning: possibly unbound variable `r-safe'
gnu/packages/cran.scm:112679:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:112680:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:113397:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:114710:12: warning: possibly unbound variable `ghc-pandoc'
gnu/packages/cran.scm:119020:6: warning: possibly unbound variable `apparmor'
gnu/packages/cran.scm:119020:6: warning: possibly unbound variable `pandoc'
gnu/packages/cran.scm:119999:12: warning: possibly unbound variable `jri'
gnu/packages/cran.scm:120356:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:121238:6: warning: possibly unbound variable `r-ebimage'
gnu/packages/cran.scm:121261:6: warning: possibly unbound variable `r-ebimage'
gnu/packages/cran.scm:122061:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:124952:6: warning: possibly unbound variable `r-kegggraph'
gnu/packages/cran.scm:125515:6: warning: possibly unbound variable `r-minet'
gnu/packages/cran.scm:125922:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:126481:6: warning: possibly unbound variable `c++11'
gnu/packages/cran.scm:126481:6: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:126481:6: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:126666:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:126715:23: warning: possibly unbound variable `r-qvalue'
gnu/packages/cran.scm:126759:6: warning: possibly unbound variable `pandoc'
gnu/packages/cran.scm:126759:6: warning: possibly unbound variable `pywin32'
gnu/packages/cran.scm:127525:12: warning: possibly unbound variable `fftw'
gnu/packages/cran.scm:127528:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:127732:23: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:130778:6: warning: possibly unbound variable `r-xcms'
gnu/packages/cran.scm:130805:12: warning: possibly unbound variable `bwidget'
gnu/packages/cran.scm:131348:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:132613:12: warning: possibly unbound variable `jags'
gnu/packages/cran.scm:133003:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:133025:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:133030:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:133051:12: warning: possibly unbound variable `monetdb'
gnu/packages/cran.scm:133555:6: warning: possibly unbound variable `atk'
gnu/packages/cran.scm:133555:6: warning: possibly unbound variable `curl'
gnu/packages/cran.scm:133555:6: warning: possibly unbound variable `gdal'
gnu/packages/cran.scm:133555:6: warning: possibly unbound variable `glib'
gnu/packages/cran.scm:133555:6: warning: possibly unbound variable `gtk+'
gnu/packages/cran.scm:133555:6: warning: possibly unbound variable `pango'
gnu/packages/cran.scm:133555:6: warning: possibly unbound variable `proj.4'
gnu/packages/cran.scm:133563:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:133936:12: warning: possibly unbound variable `mrtswath'
gnu/packages/cran.scm:134618:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:134618:6: warning: possibly unbound variable `r-gsva'
gnu/packages/cran.scm:135861:6: warning: possibly unbound variable `r-phyloseq'
gnu/packages/cran.scm:136688:6: warning: possibly unbound variable `r-globalancova'
gnu/packages/cran.scm:136688:6: warning: possibly unbound variable `r-globaltest'
gnu/packages/cran.scm:137369:6: warning: possibly unbound variable `r-gwidgets2'
gnu/packages/cran.scm:137641:12: warning: possibly unbound variable `texlive'
gnu/packages/cran.scm:138639:12: warning: possibly unbound variable `fftw'
gnu/packages/cran.scm:138977:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:139961:6: warning: possibly unbound variable `r-geometadb'
gnu/packages/cran.scm:139961:6: warning: possibly unbound variable `r-geoquery'
gnu/packages/cran.scm:139961:6: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:140105:6: warning: possibly unbound variable `r-ebimage'
gnu/packages/cran.scm:140105:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:140742:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:141422:6: warning: possibly unbound variable `#{'bwidget'}#'
gnu/packages/cran.scm:141422:6: warning: possibly unbound variable `#{'tktable'}#'
gnu/packages/cran.scm:141422:6: warning: possibly unbound variable `windows'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-beadarray'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-convert'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-geometadb'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-geoquery'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-globaltest'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-kegggraph'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-keggrest'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-lumi'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-marray'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-oligo'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-pdinfobuilder'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-simpleaffy'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-ssize'
gnu/packages/cran.scm:145516:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:146228:6: warning: possibly unbound variable `r-icens'
gnu/packages/cran.scm:148988:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:149453:12: warning: possibly unbound variable `jags'
gnu/packages/cran.scm:149870:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:150534:12: warning: possibly unbound variable `libxml2-devel'
gnu/packages/cran.scm:150535:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:151616:6: warning: possibly unbound variable `ij.jar'
gnu/packages/cran.scm:151616:6: warning: possibly unbound variable `imagej'
gnu/packages/cran.scm:151616:6: warning: possibly unbound variable `java'
gnu/packages/cran.scm:152739:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:153036:6: warning: possibly unbound variable `r-gosemsim'
gnu/packages/cran.scm:153532:12: warning: possibly unbound variable `fftw'
gnu/packages/cran.scm:154007:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:155176:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:155745:12: warning: possibly unbound variable `gmp'
gnu/packages/cran.scm:155795:6: warning: possibly unbound variable `r-kegggraph'
gnu/packages/cran.scm:156124:12: warning: possibly unbound variable `mongodb'
gnu/packages/cran.scm:157108:12: warning: possibly unbound variable `jags'
gnu/packages/cran.scm:157176:6: warning: possibly unbound variable `r-lfa'
gnu/packages/cran.scm:157465:12: warning: possibly unbound variable `jags'
gnu/packages/cran.scm:157554:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:159176:23: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:159757:6: warning: possibly unbound variable `r-rdisop'
gnu/packages/cran.scm:160147:6: warning: possibly unbound variable `r-a4core'
gnu/packages/cran.scm:160371:12: warning: possibly unbound variable `xpdf'
gnu/packages/cran.scm:161957:6: warning: possibly unbound variable `fftw3'
gnu/packages/cran.scm:161957:6: warning: possibly unbound variable `libtiff'
gnu/packages/cran.scm:161957:6: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:161971:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:162660:6: warning: possibly unbound variable `r-gwidgets2'
gnu/packages/cran.scm:162684:6: warning: possibly unbound variable `r-gwidgets2'
gnu/packages/cran.scm:164370:6: warning: possibly unbound variable `r-nem'
gnu/packages/cran.scm:164560:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:164727:12: warning: possibly unbound variable `openmp'
gnu/packages/cran.scm:164983:12: warning: possibly unbound variable `jags'
gnu/packages/cran.scm:165386:6: warning: possibly unbound variable `r-genoset'
gnu/packages/cran.scm:165610:6: warning: possibly unbound variable `r-phyloseq'
gnu/packages/cran.scm:166183:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:166711:6: warning: possibly unbound variable `r-snpstats'
gnu/packages/cran.scm:168228:6: warning: possibly unbound variable `r-hitc'
gnu/packages/cran.scm:168509:6: warning: possibly unbound variable `r-ebimage'
gnu/packages/cran.scm:169303:6: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:169654:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:169783:6: warning: possibly unbound variable `r-ggtree'
gnu/packages/cran.scm:170212:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:170430:6: warning: possibly unbound variable `r-gwidgets2'
gnu/packages/cran.scm:170741:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:171171:6: warning: possibly unbound variable `r-illuminaio'
gnu/packages/cran.scm:172374:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:173049:12: warning: possibly unbound variable `git'
gnu/packages/cran.scm:173049:12: warning: possibly unbound variable `svn'
gnu/packages/cran.scm:173074:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:173499:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:174496:12: warning: possibly unbound variable `gmt'
gnu/packages/cran.scm:174802:23: warning: possibly unbound variable `r-qvalue'
gnu/packages/cran.scm:175813:6: warning: possibly unbound variable `r-ebimage'
gnu/packages/cran.scm:176034:6: warning: possibly unbound variable `r-ebimage'
gnu/packages/cran.scm:176082:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:177063:12: warning: possibly unbound variable `bwidget'
gnu/packages/cran.scm:177381:6: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:177538:6: warning: possibly unbound variable `getopt::long'
gnu/packages/cran.scm:178514:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:178890:12: warning: possibly unbound variable `openmp'
gnu/packages/cran.scm:179197:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:180637:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:181768:6: warning: possibly unbound variable `r-keggrest'
gnu/packages/cran.scm:181921:6: warning: possibly unbound variable `difflib'
gnu/packages/cran.scm:181921:6: warning: possibly unbound variable `fuzzywuzzy'
gnu/packages/cran.scm:182640:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:182694:6: warning: possibly unbound variable `r-breastcancervdx'
gnu/packages/cran.scm:183747:12: warning: possibly unbound variable `freesurfer'
gnu/packages/cran.scm:184569:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:184976:12: warning: possibly unbound variable `opengl'
gnu/packages/cran.scm:184976:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:185698:6: warning: possibly unbound variable `r-flowcore'
gnu/packages/cran.scm:185698:6: warning: possibly unbound variable `r-flowworkspace'
gnu/packages/cran.scm:186415:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:187445:12: warning: possibly unbound variable `fftw'
gnu/packages/cran.scm:187559:12: warning: possibly unbound variable `bwidget'
gnu/packages/cran.scm:190788:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:191101:6: warning: possibly unbound variable `r-gage'
gnu/packages/cran.scm:192335:6: warning: possibly unbound variable `r-gdsfmt'
gnu/packages/cran.scm:192335:6: warning: possibly unbound variable `r-snprelate'
gnu/packages/cran.scm:193352:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:194097:6: warning: possibly unbound variable `r-xcms'
gnu/packages/cran.scm:195585:6: warning: possibly unbound variable `r-gcrma'
gnu/packages/cran.scm:195585:6: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:195585:6: warning: possibly unbound variable `r-siggenes'
gnu/packages/cran.scm:195755:6: warning: possibly unbound variable `r-globaltest'
gnu/packages/cran.scm:195755:6: warning: possibly unbound variable `r-gsealm'
gnu/packages/cran.scm:195755:6: warning: possibly unbound variable `r-icheck'
gnu/packages/cran.scm:196132:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:199115:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:199976:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:200639:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:200662:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:201420:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:201672:12: warning: possibly unbound variable `domino'
gnu/packages/cran.scm:202443:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:202841:12: warning: possibly unbound variable `fftw'
gnu/packages/cran.scm:204525:6: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:204946:6: warning: possibly unbound variable `bwidget'
gnu/packages/cran.scm:204946:6: warning: possibly unbound variable `tktable'
gnu/packages/cran.scm:205040:6: warning: possibly unbound variable `r-all'
gnu/packages/cran.scm:205040:6: warning: possibly unbound variable `r-mlinterfaces'
gnu/packages/cran.scm:205959:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:206368:6: warning: possibly unbound variable `r-affxparser'
gnu/packages/cran.scm:206368:6: warning: possibly unbound variable `r-oligo'
gnu/packages/cran.scm:206461:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:206667:12: warning: possibly unbound variable `jri'
gnu/packages/cran.scm:206717:12: warning: possibly unbound variable `jri'
gnu/packages/cran.scm:207380:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:207667:6: warning: possibly unbound variable `r-reder'
gnu/packages/cran.scm:207951:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:208571:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:208897:6: warning: possibly unbound variable `tktable'
gnu/packages/cran.scm:209322:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:210838:6: warning: possibly unbound variable `r-chopsticks'
gnu/packages/cran.scm:212358:6: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:212358:6: warning: possibly unbound variable `r-qvalue'
gnu/packages/cran.scm:212930:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:213704:6: warning: possibly unbound variable `r-xcms'
gnu/packages/cran.scm:214806:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:215911:12: warning: possibly unbound variable `mysql'
gnu/packages/cran.scm:215913:6: warning: possibly unbound variable `r-geoquery'
gnu/packages/cran.scm:216974:6: warning: possibly unbound variable `java'
gnu/packages/cran.scm:216974:6: warning: possibly unbound variable `mysql'
gnu/packages/cran.scm:216974:6: warning: possibly unbound variable `plink2'
gnu/packages/cran.scm:218687:6: warning: possibly unbound variable `r-marray'
gnu/packages/cran.scm:219485:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:220679:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:220812:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:224078:6: warning: possibly unbound variable `r-qvalue'
gnu/packages/cran.scm:224103:12: warning: possibly unbound variable `exiftool'
gnu/packages/cran.scm:225122:12: warning: possibly unbound variable `jags'
gnu/packages/cran.scm:225480:12: warning: possibly unbound variable `jags'
gnu/packages/cran.scm:227186:23: warning: possibly unbound variable `r-qvalue'
gnu/packages/cran.scm:228483:23: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:228780:6: warning: possibly unbound variable `r-gosemsim'
gnu/packages/cran.scm:228927:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:229224:6: warning: possibly unbound variable `r-meigor'
gnu/packages/cran.scm:231929:12: warning: possibly unbound variable `ggobi'
gnu/packages/cran.scm:231958:6: warning: possibly unbound variable `r-beadarray'
gnu/packages/cran.scm:232207:12: warning: possibly unbound variable `jags'
gnu/packages/cran.scm:233592:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:234112:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:234209:12: warning: possibly unbound variable `jags'
gnu/packages/cran.scm:234857:6: warning: possibly unbound variable `r-affyplm'
gnu/packages/cran.scm:235067:12: warning: possibly unbound variable `jags'
gnu/packages/cran.scm:235095:23: warning: possibly unbound variable `r-rscala'
gnu/packages/cran.scm:235619:6: warning: possibly unbound variable `r-rdavidwebservice'
gnu/packages/cran.scm:236118:6: warning: possibly unbound variable `r-ebimage'
gnu/packages/cran.scm:237433:12: warning: possibly unbound variable `bwidget'
gnu/packages/cran.scm:237713:23: warning: possibly unbound variable `r-sagx'
gnu/packages/cran.scm:238175:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:238399:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:238694:6: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:238938:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:242129:6: warning: possibly unbound variable `r-phyloseq'
gnu/packages/cran.scm:242756:6: warning: possibly unbound variable `r-datasets'
Too many heap sections: Increase MAXHINCR or MAX_HEAP_SECTS
/bin/sh: line 7: 12353 Aborted                 (core dumped) XDG_CACHE_HOME=/nowhere host=x86_64-unknown-linux-gnu srcdir="." ./pre-inst-env /gnu/store/2kgp5d4wh40b49gp4qwqh2b4il29gq6g-profile/bin/guile -L "." -L "." --no-auto-compile -s "."/build-aux/compile-all.scm guix/base16.scm guix/base32.scm guix/base64.scm guix/cpio.scm guix/records.scm guix/gcrypt.scm guix/hash.scm guix/pk-crypto.scm guix/pki.scm guix/combinators.scm guix/memoization.scm guix/utils.scm guix/sets.scm guix/modules.scm guix/download.scm guix/discovery.scm guix/git-download.scm guix/hg-download.scm guix/monads.scm guix/monad-repl.scm guix/gexp.scm guix/profiles.scm guix/serialization.scm guix/nar.scm guix/derivations.scm guix/grafts.scm guix/gnu-maintenance.scm guix/upstream.scm guix/licenses.scm guix/graph.scm guix/cache.scm guix/cve.scm guix/workers.scm guix/zlib.scm guix/build-system.scm guix/build-system/ant.scm guix/build-system/cargo.scm guix/build-system/cmake.scm guix/build-system/dub.scm 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-- 
Ricardo Wurmus