From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
To: Guix-devel <guix-devel@gnu.org>
Subject: [PATCH] gnu: Add Biopython.
Date: Wed, 15 Apr 2015 17:47:32 +0200 [thread overview]
Message-ID: <idjlhhtxujv.fsf@bimsb-sys02.mdc-berlin.net> (raw)
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From ca3474b1a639e43d708aad4385057cd84e3cce8b Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Wed, 15 Apr 2015 17:46:35 +0200
Subject: [PATCH] gnu: Add Biopython.
* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython): New
variables.
---
gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0239e97..6d53e4e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -187,6 +187,35 @@ pybedtools extends BEDTools by offering feature-level manipulations from with
Python.")
(license license:gpl2+)))
+(define-public python-biopython
+ (package
+ (name "python-biopython")
+ (version "1.65")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "http://biopython.org/DIST/biopython-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "13m8s9jkrw40zvdp1rl709n6lmgdh4f52aann7gzr6sfp0fwhg26"))))
+ (build-system python-build-system)
+ (inputs
+ `(("python-numpy" ,python-numpy)))
+ (native-inputs
+ `(("python-setuptools" ,python2-setuptools)))
+ (home-page "http://biopython.org/")
+ (synopsis "Set of tools for biological computation in Python")
+ (description
+ "Biopython is a set of tools for biological computation written in Python
+by an international team of developers.")
+ (license license:expat)))
+
+(define-public python2-biopython
+ (package (inherit (package-with-python2 python-biopython))
+ (inputs
+ `(("python2-numpy" ,python2-numpy)))))
+
(define-public bowtie
(package
(name "bowtie")
--
2.1.0
next reply other threads:[~2015-04-15 15:47 UTC|newest]
Thread overview: 11+ messages / expand[flat|nested] mbox.gz Atom feed top
2015-04-15 15:47 Ricardo Wurmus [this message]
2015-04-15 19:55 ` [PATCH] gnu: Add Biopython Ludovic Courtès
2015-04-16 8:46 ` Ricardo Wurmus
2015-04-16 9:00 ` Andreas Enge
2015-04-16 12:36 ` Ludovic Courtès
2015-04-16 13:10 ` Ricardo Wurmus
2015-04-18 16:01 ` Ricardo Wurmus
2015-04-18 17:28 ` Andreas Enge
2015-04-16 13:02 ` John Darrington
2015-04-16 13:16 ` Ludovic Courtès
2015-04-16 15:40 ` Andreas Enge
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