[PATCH]: Add HTSeq.

[PATCH]: Add HTSeq.

[Ricardo Wurmus]

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From 3b812ce1c3458f832aa6eaac0d15502832bae8d5 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Fri, 20 Feb 2015 16:41:50 +0100
Subject: [PATCH] gnu: Add HTSeq.

* gnu/packages/bioinformatics.scm (htseq): New variable.
---
 gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c13e649..b64dab7 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -311,6 +311,30 @@ several alignment strategies enable effective alignment of RNA-seq reads, in
 particular, reads spanning multiple exons.")
     (license license:gpl3+)))
 
+(define-public htseq
+  (package
+    (name "htseq")
+    (version "0.6.1")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "https://pypi.python.org/packages/source/H/HTSeq/HTSeq-"
+                    version ".tar.gz"))
+              (sha256
+               (base32
+                "1i85ppf2j2lj12m0x690qq5nn17xxk23pbbx2c83r8ayb5wngzwv"))))
+    (build-system python-build-system)
+    (arguments `(#:python ,python-2)) ; only Python 2 is supported
+    (inputs
+     `(("python-numpy" ,python2-numpy)
+       ("python-setuptools" ,python2-setuptools)))
+    (home-page "http://www-huber.embl.de/users/anders/HTSeq/")
+    (synopsis "Analysing high-throughput sequencing data with Python")
+    (description
+     "HTSeq is a Python package that provides infrastructure to process data
+from high-throughput sequencing assays.")
+    (license license:gpl3+)))
+
 (define-public rseqc
   (package
     (name "rseqc")
-- 
2.1.0

Re: [PATCH]: Add HTSeq.

[Andreas Enge]

Looks good, please push! It is a bit unfortunate that the sources themselves
do not mention the license (PKG-INFO states that the license is unknown), but
the web page is clear. So maybe you could make the suggestion for the next
release to update the PKG-INFO file, and to maybe add a COPYING to the tarball.

Andreas