From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
To: Guix-devel <guix-devel@gnu.org>
Subject: [PATCH]: Add HTSeq.
Date: Fri, 20 Feb 2015 16:43:06 +0100 [thread overview]
Message-ID: <idjk2zcio6t.fsf@bimsb-sys02.mdc-berlin.net> (raw)
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From 3b812ce1c3458f832aa6eaac0d15502832bae8d5 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Fri, 20 Feb 2015 16:41:50 +0100
Subject: [PATCH] gnu: Add HTSeq.
* gnu/packages/bioinformatics.scm (htseq): New variable.
---
gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c13e649..b64dab7 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -311,6 +311,30 @@ several alignment strategies enable effective alignment of RNA-seq reads, in
particular, reads spanning multiple exons.")
(license license:gpl3+)))
+(define-public htseq
+ (package
+ (name "htseq")
+ (version "0.6.1")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://pypi.python.org/packages/source/H/HTSeq/HTSeq-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1i85ppf2j2lj12m0x690qq5nn17xxk23pbbx2c83r8ayb5wngzwv"))))
+ (build-system python-build-system)
+ (arguments `(#:python ,python-2)) ; only Python 2 is supported
+ (inputs
+ `(("python-numpy" ,python2-numpy)
+ ("python-setuptools" ,python2-setuptools)))
+ (home-page "http://www-huber.embl.de/users/anders/HTSeq/")
+ (synopsis "Analysing high-throughput sequencing data with Python")
+ (description
+ "HTSeq is a Python package that provides infrastructure to process data
+from high-throughput sequencing assays.")
+ (license license:gpl3+)))
+
(define-public rseqc
(package
(name "rseqc")
--
2.1.0
next reply other threads:[~2015-02-20 15:43 UTC|newest]
Thread overview: 2+ messages / expand[flat|nested] mbox.gz Atom feed top
2015-02-20 15:43 Ricardo Wurmus [this message]
2015-02-20 17:27 ` [PATCH]: Add HTSeq Andreas Enge
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