From d409756bd2fc2db396d6257cfed42a213f6f43f6 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 8 May 2015 16:53:28 +0200 Subject: [PATCH] gnu: shogun: Remove non-free source files. * gnu/packages/bioinformatics.scm (shogun)[source]: Add snippet to remove non-free sources. --- gnu/packages/bioinformatics.scm | 36 +++++++++++++++++++++++++++++++++++- 1 file changed, 35 insertions(+), 1 deletion(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index fa7ff4c..e1dfda1 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1605,7 +1605,41 @@ against local background noises.") "/sources/shogun-" version ".tar.bz2")) (sha256 (base32 - "159nlijnb7mnrv9za80wnm1shwvy45hgrqzn51hxy7gw4z6d6fdb")))) + "159nlijnb7mnrv9za80wnm1shwvy45hgrqzn51hxy7gw4z6d6fdb")) + (modules '((guix build utils) + (ice-9 rdelim))) + (snippet + '(begin + ;; Remove non-free sources and files referencing them + (for-each delete-file + (find-files "src/shogun/classifier/svm/" + "SVMLight\\.(cpp|h)")) + (for-each delete-file + (find-files "examples/undocumented/libshogun/" + (string-append + "(classifier_.*svmlight.*|" + "evaluation_cross_validation_locked_comparison).cpp"))) + ;; Remove non-free functions. + (for-each + (lambda (file) + (with-atomic-file-replacement file + (lambda (in out) + (let loop ((line (read-line in 'concat)) + (skipping? #f)) + (if (eof-object? line) + #t + (let ((skip-next? + (or (and skipping? + (not (string-prefix? + "#endif //USE_SVMLIGHT" line))) + (string-prefix? + "#ifdef USE_SVMLIGHT" line)))) + (when (or (not skipping?) + (and skipping? (not skip-next?))) + (display line out)) + (loop (read-line in 'concat) skip-next?))))))) + (find-files "src/shogun/kernel/" + "^Kernel\\.(cpp|h)")))))) (build-system cmake-build-system) (arguments '(#:tests? #f ;no check target -- 2.1.0