From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ricardo Wurmus Subject: [PATCH] Add r-seqlogo. Date: Wed, 6 Apr 2016 17:28:49 +0200 Message-ID: Mime-Version: 1.0 Content-Type: text/x-patch Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:33881) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1anpOI-0002az-NU for guix-devel@gnu.org; Wed, 06 Apr 2016 11:29:11 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1anpOF-0006Hn-Ey for guix-devel@gnu.org; Wed, 06 Apr 2016 11:29:10 -0400 Received: from sinope.bbbm.mdc-berlin.de ([141.80.25.23]:55803) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1anpOF-0006HP-5r for guix-devel@gnu.org; Wed, 06 Apr 2016 11:29:07 -0400 Received: from localhost (localhost [127.0.0.1]) by sinope.bbbm.mdc-berlin.de (Postfix) with ESMTP id 71F8A280991 for ; Wed, 6 Apr 2016 17:29:05 +0200 (CEST) Received: from sinope.bbbm.mdc-berlin.de ([127.0.0.1]) by localhost (sinope.bbbm.mdc-berlin.de [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id Z_tHwDrKJL8M for ; Wed, 6 Apr 2016 17:28:59 +0200 (CEST) Received: from HTCATWO.mdc-berlin.net (puck.citx.mdc-berlin.de [141.80.36.101]) (using TLSv1 with cipher ECDHE-RSA-AES256-SHA (256/256 bits)) (No client certificate requested) by sinope.bbbm.mdc-berlin.de (Postfix) with ESMTPS for ; Wed, 6 Apr 2016 17:28:59 +0200 (CEST) Content-Disposition: inline; filename="0001-gnu-Add-r-seqlogo.patch" List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org To: guix-devel >From 1a23897008d3c0fc86459d111ad3847b404051b9 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 18 Mar 2016 12:15:24 +0100 Subject: [PATCH] gnu: Add r-seqlogo. * gnu/packages/bioinformatics.scm (r-seqlogo): New variable. --- gnu/packages/bioinformatics.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c7f50b9..b119fd2 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4775,6 +4775,27 @@ annotations for the genome of the model fruit fly Drosophila melanogaster.") annotations for the genome of the model mouse Mus musculus.") (license license:artistic2.0))) +(define-public r-seqlogo + (package + (name "r-seqlogo") + (version "1.36.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "seqLogo" version)) + (sha256 + (base32 + "0kn1a1nf2j4v9c09vjkz9bmxlln7yhg87bnyrdsxy1m55x56rn5k")))) + (properties `((upstream-name . "seqLogo"))) + (build-system r-build-system) + (home-page "http://bioconductor.org/packages/seqLogo") + (synopsis "Sequence logos for DNA sequence alignments") + (description + "seqLogo takes the position weight matrix of a DNA sequence motif and +plots the corresponding sequence logo as introduced by Schneider and +Stephens (1990).") + (license license:lgpl2.0+))) + (define-public r-qtl (package (name "r-qtl") -- 2.1.0