From f960fda0d38d0a71519072ad8fae8edd7b90b2c6 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Thu, 25 Feb 2016 14:01:14 +0100
Subject: [PATCH 1/5] gnu: python-pysam, python2-pysam: Move to
 bioinformatics.scm.

* gnu/packages/python.scm (python-pysam, python2-pysam): Move to...
* gnu/packages/bioinformatics.scm (python-pysam, python2-pysam):
  ...here.
---
 gnu/packages/bioinformatics.scm | 38 ++++++++++++++++++++++++++++++++++++++
 gnu/packages/python.scm         | 38 --------------------------------------
 2 files changed, 38 insertions(+), 38 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index e570487..a86f7d6 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -808,6 +808,44 @@ and more accurate.  BWA-MEM also has better performance than BWA-backtrack for
 multiple sequence alignments.")
     (license license:expat)))
 
+(define-public python-pysam
+  (package
+    (name "python-pysam")
+    (version "0.8.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://pypi.python.org/packages/source/p/pysam/pysam-"
+                           version ".tar.gz"))
+       (sha256
+        (base32
+         "1fb6i6hbpzxaxb62kyyp5alaidwhj40f7c6gwbhr6njzlqd5l459"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:tests? #f ; tests are excluded in the manifest
+       #:phases
+       (alist-cons-before
+        'build 'set-flags
+        (lambda _
+          (setenv "LDFLAGS" "-lncurses")
+          (setenv "CFLAGS" "-D_CURSES_LIB=1"))
+        %standard-phases)))
+    (inputs
+     `(("python-cython"     ,python-cython)
+       ("python-setuptools" ,python-setuptools)
+       ("ncurses"           ,ncurses)
+       ("zlib"              ,zlib)))
+    (home-page "https://github.com/pysam-developers/pysam")
+    (synopsis "Python bindings to the SAMtools C API")
+    (description
+     "Pysam is a Python module for reading and manipulating files in the
+SAM/BAM format.  Pysam is a lightweight wrapper of the SAMtools C API.  It
+also includes an interface for tabix.")
+    (license license:expat)))
+
+(define-public python2-pysam
+  (package-with-python2 python-pysam))
+
 (define-public clipper
   (package
     (name "clipper")
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index 46eda76..214a8ea 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -1039,44 +1039,6 @@ get the local timezone information, unless you know the zoneinfo name, and
 under several distributions that's hard or impossible to figure out.")
     (license cc0)))
 
-(define-public python-pysam
-  (package
-    (name "python-pysam")
-    (version "0.8.1")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append "https://pypi.python.org/packages/source/p/pysam/pysam-"
-                           version ".tar.gz"))
-       (sha256
-        (base32
-         "1fb6i6hbpzxaxb62kyyp5alaidwhj40f7c6gwbhr6njzlqd5l459"))))
-    (build-system python-build-system)
-    (arguments
-     `(#:tests? #f ; tests are excluded in the manifest
-       #:phases
-       (alist-cons-before
-        'build 'set-flags
-        (lambda _
-          (setenv "LDFLAGS" "-lncurses")
-          (setenv "CFLAGS" "-D_CURSES_LIB=1"))
-        %standard-phases)))
-    (inputs
-     `(("python-cython"     ,python-cython)
-       ("python-setuptools" ,python-setuptools)
-       ("ncurses"           ,ncurses)
-       ("zlib"              ,zlib)))
-    (home-page "https://github.com/pysam-developers/pysam")
-    (synopsis "Python bindings to the SAMtools C API")
-    (description
-     "Pysam is a Python module for reading and manipulating files in the
-SAM/BAM format.  Pysam is a lightweight wrapper of the SAMtools C API.  It
-also includes an interface for tabix.")
-    (license license:expat)))
-
-(define-public python2-pysam
-  (package-with-python2 python-pysam))
-
 (define-public python2-pysqlite
   (package
     (name "python2-pysqlite")
-- 
2.1.0