From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ricardo Wurmus Subject: [PATCH] gnu: Add snakemake. Date: Mon, 2 Mar 2015 17:37:16 +0100 Message-ID: Mime-Version: 1.0 Content-Type: text/x-patch Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:41786) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1YSTLV-0002Ke-MA for guix-devel@gnu.org; Mon, 02 Mar 2015 11:37:30 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1YSTLQ-0006dd-Jw for guix-devel@gnu.org; Mon, 02 Mar 2015 11:37:29 -0500 Received: from venus.bbbm.mdc-berlin.de ([141.80.25.30]:46825) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1YSTLQ-0006dF-BB for guix-devel@gnu.org; Mon, 02 Mar 2015 11:37:24 -0500 Received: from localhost (localhost [127.0.0.1]) by venus.bbbm.mdc-berlin.de (Postfix) with ESMTP id DE0FA380B18 for ; Mon, 2 Mar 2015 17:37:22 +0100 (CET) Received: from venus.bbbm.mdc-berlin.de ([127.0.0.1]) by localhost (venus.bbbm.mdc-berlin.de [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id Dztf_NRCGWBa for ; Mon, 2 Mar 2015 17:37:17 +0100 (CET) Received: from HTCATWO.mdc-berlin.net (puck.citx.mdc-berlin.de [141.80.36.101]) by venus.bbbm.mdc-berlin.de (Postfix) with ESMTP for ; Mon, 2 Mar 2015 17:37:17 +0100 (CET) Content-Disposition: inline; filename="0001-gnu-Add-snakemake.patch" List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org To: Guix-devel >From 9d03e7d6bf8b6704f7e743323ccb948d0d9cc820 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 2 Mar 2015 17:36:28 +0100 Subject: [PATCH] gnu: Add snakemake. * gnu/packages/python.scm (snakemake): New variable. --- gnu/packages/python.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index ee2f5d0..e0c9d12 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -3300,3 +3300,25 @@ interfaces in an easy and portable manner.") (define-public python2-netifaces (package-with-python2 python-netifaces)) + +(define-public snakemake + (package + (name "snakemake") + (version "3.2.1") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/s/snakemake/snakemake-" + version ".tar.gz")) + (sha256 + (base32 "0fi4b63sj60hvi7rfydvmz2icl4wj74djw5sn2gl8hxd02qw4b91")))) + (build-system python-build-system) + (inputs `(("python-setuptools" ,python-setuptools))) + (home-page "https://bitbucket.org/johanneskoester/snakemake") + (synopsis "Python-based execution environment for make-like workflows") + (description + "Snakemake aims to reduce the complexity of creating workflows by +providing a clean and modern domain specific specification language (DSL) in +Python style, together with a fast and comfortable execution environment.") + (license license:expat))) -- 2.1.0