From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ricardo Wurmus Subject: Re: [PATCH] Add preseq. Date: Wed, 1 Jul 2015 15:30:56 +0200 Message-ID: References: Mime-Version: 1.0 Content-Type: text/plain Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:35388) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1ZAI6b-0006F1-P6 for guix-devel@gnu.org; Wed, 01 Jul 2015 09:31:19 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1ZAI6W-0006Uh-ME for guix-devel@gnu.org; Wed, 01 Jul 2015 09:31:13 -0400 Received: from venus.bbbm.mdc-berlin.de ([141.80.25.30]:48144) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1ZAI6W-0006Tz-CW for guix-devel@gnu.org; Wed, 01 Jul 2015 09:31:08 -0400 Received: from localhost (localhost [127.0.0.1]) by venus.bbbm.mdc-berlin.de (Postfix) with ESMTP id 72426380862 for ; Wed, 1 Jul 2015 15:31:07 +0200 (CEST) Received: from venus.bbbm.mdc-berlin.de ([127.0.0.1]) by localhost (venus.bbbm.mdc-berlin.de [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id MVFLDPEQbwwd for ; Wed, 1 Jul 2015 15:31:01 +0200 (CEST) Received: from HTCAONE.mdc-berlin.net (mab.citx.mdc-berlin.de [141.80.36.102]) by venus.bbbm.mdc-berlin.de (Postfix) with ESMTP for ; Wed, 1 Jul 2015 15:31:01 +0200 (CEST) In-Reply-To: List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org To: guix-devel > Attached is a new version that includes support for BAM files, but > without using the bundled version of samtools. Two patches were > necessary that I have submitted upstream. > > I'm still testing this with a user, and I'm waiting for upstream to > comment on the patches, so I'm not in a hurry to push this. Upstream merged the patches, but there's no new release yet. See https://github.com/smithlabcode/preseq/pull/15. It seems to work fine. ~~ Ricardo