From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp0 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id 0FU/HWBNtV/vdQAA0tVLHw (envelope-from ) for ; Wed, 18 Nov 2020 16:35:44 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp0 with LMTPS id SN49GWBNtV+iBAAA1q6Kng (envelope-from ) for ; Wed, 18 Nov 2020 16:35:44 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id BD5FB940480 for ; Wed, 18 Nov 2020 16:35:43 +0000 (UTC) Received: from localhost ([::1]:46544 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kfQQo-0004UV-ND for larch@yhetil.org; Wed, 18 Nov 2020 11:35:42 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:54488) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kfQOx-0002Az-Uh for guix-devel@gnu.org; Wed, 18 Nov 2020 11:33:48 -0500 Received: from fencepost.gnu.org ([2001:470:142:3::e]:56334) by eggs.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kfQOx-0004AV-Jw; Wed, 18 Nov 2020 11:33:47 -0500 Received: from 2001-1c02-0b2a-aa00-93bf-7c8c-0fae-b738.cable.dynamic.v6.ziggo.nl ([2001:1c02:b2a:aa00:93bf:7c8c:fae:b738]:59804) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_256_CBC_SHA1:256) (Exim 4.82) (envelope-from ) id 1kfQOx-0000wY-3Z; Wed, 18 Nov 2020 11:33:47 -0500 Message-ID: Subject: Re: Updating to latest Bioconductor release From: Roel Janssen To: zimoun Date: Wed, 18 Nov 2020 17:33:41 +0100 In-Reply-To: References: <86tutnmvyn.fsf@gmail.com> <63ad286432442f3c6c22acf60b50632d1a4d4b8d.camel@gnu.org> Content-Type: text/plain; charset="UTF-8" User-Agent: Evolution 3.38.1 (3.38.1-1.fc33) MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-BeenThere: guix-devel@gnu.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: Guix Devel Errors-To: guix-devel-bounces+larch=yhetil.org@gnu.org Sender: "Guix-devel" X-Scanner: ns3122888.ip-94-23-21.eu Authentication-Results: aspmx1.migadu.com; dkim=none; dmarc=pass (policy=none) header.from=gnu.org; spf=pass (aspmx1.migadu.com: domain of guix-devel-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-devel-bounces@gnu.org X-Spam-Score: -1.51 X-TUID: yTfw7O8ynPc0 On Wed, 2020-11-18 at 17:23 +0100, zimoun wrote: > Hi Roel, > > On Wed, 18 Nov 2020 at 17:13, Roel Janssen wrote: > > > I pushed updates and fixes for various packages. Now I'm at r- > > rhdf5lib. > > Cool! > > > > In 38881c9368595c5a894abe3695d98aabb1ef0029 you updated it to > > 1.12.0, > > but it seems that building has changed quite a bit.  I wonder how > > it > > could've built for you? > > I have not.  The idea proposed by Ricardo was to update everything > and > let Cuirass build.  BTW, I do not have enough power at hand to > rebuild > all the BioConductor packages. > Okay. Then I'll look into it. I currently have only these left as changed in my tree: - r-atacseqqc: Needs r-rhdf5lib. - r-cytoml: Needs r-rhdf5lib. - r-scater: Needs r-rhdf5lib. - r-scuttle (new package for r-scran): Needs r-rhdf5lib. - r-scran: Needs r-scuttle. So it seems we are almost there. I pushed the rest to the wip-r branch. Kind regards, Roel Janssen