From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ben Woodcroft Subject: [PATCH 19/22] gnu: Add exonerate. Date: Wed, 27 Jul 2016 22:54:20 +1000 Message-ID: References: <20160727125423.7768-1-donttrustben@gmail.com> Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:55227) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bSONC-0000PB-9U for guix-devel@gnu.org; Wed, 27 Jul 2016 08:55:43 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1bSON8-0004il-PY for guix-devel@gnu.org; Wed, 27 Jul 2016 08:55:41 -0400 Received: from mail-pf0-x243.google.com ([2607:f8b0:400e:c00::243]:34960) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bSON8-0004iY-GG for guix-devel@gnu.org; Wed, 27 Jul 2016 08:55:38 -0400 Received: by mail-pf0-x243.google.com with SMTP id h186so1829321pfg.2 for ; Wed, 27 Jul 2016 05:55:38 -0700 (PDT) Received: from localhost.localdomain ([103.25.181.216]) by smtp.googlemail.com with ESMTPSA id o80sm9177941pfa.67.2016.07.27.05.55.34 for (version=TLS1_2 cipher=ECDHE-RSA-AES128-SHA bits=128/128); Wed, 27 Jul 2016 05:55:36 -0700 (PDT) In-Reply-To: <20160727125423.7768-1-donttrustben@gmail.com> In-Reply-To: References: List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: guix-devel@gnu.org * gnu/packages/bioinformatics.scm (exonerate): New variable. --- gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 5ea2240..14ac57f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -51,6 +51,7 @@ #:use-module (gnu packages gawk) #:use-module (gnu packages gcc) #:use-module (gnu packages gd) + #:use-module (gnu packages glib) #:use-module (gnu packages groff) #:use-module (gnu packages image) #:use-module (gnu packages java) @@ -1917,6 +1918,34 @@ in structured XML format. This can eliminate the need for writing custom software to answer ad hoc questions.") (license license:public-domain))) +(define-public exonerate + (package + (name "exonerate") + (version "2.2.0") + (source + (origin + (method url-fetch) + (uri + (string-append + "http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/" + "exonerate-" version ".tar.gz")) + (sha256 + (base32 + "1zz5dxhpkrv5k892kcjp3wqsw5ml54qg88lmi2gk5yl82c5p58hf")))) + (build-system gnu-build-system) + (native-inputs + `(("pkg-config" ,pkg-config))) + (inputs + `(("glib" ,glib))) + (home-page + "https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate") + (synopsis "Generic tool for biological sequence alignment") + (description + "Exonerate is a generic tool for pairwise sequence comparison. It allows +the alignment of sequences using a many alignment models, either exhaustive +dynamic programming or a variety of heuristics.") + (license license:gpl3))) + (define-public express (package (name "express") -- 2.9.1