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name: gnu/packages/boost.scm 	 # note: path name is non-authoritative(*)

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;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014 John Darrington <jmd@gnu.org>
;;; Copyright © 2014, 2015 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2015 Ludovic Courtès <ludo@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (gnu packages boost)
  #:use-module ((guix licenses) #:prefix license:)
  #:use-module (guix packages)
  #:use-module (guix download)
  #:use-module (guix build-system gnu)
  #:use-module (gnu packages)
  #:use-module (gnu packages compression)
  #:use-module (gnu packages python)
  #:use-module (gnu packages tcsh)
  #:use-module (gnu packages perl))

(define-public boost
  (package
    (name "boost")
    (version "1.60.0")
    (source (origin
              (method url-fetch)
              (uri (string-append
                    "mirror://sourceforge/boost/boost_"
                    (string-map (lambda (x) (if (eq? x #\.) #\_ x)) version)
                    ".tar.bz2"))
              (sha256
               (base32
                "0fzx6dwqbrkd4bcd8pjv0fpapwmrxxwr8yx9g67lihlsk3zzysk8"))))
    (build-system gnu-build-system)
    (inputs `(("zlib" ,zlib)))
    (native-inputs
     `(("perl" ,perl)
       ("python" ,python-2)
       ("tcsh" ,tcsh)))
    (arguments
     (let ((build-flags
            `("threading=multi" "link=shared"

              ;; Set the RUNPATH to $libdir so that the libs find each other.
              (string-append "linkflags=-Wl,-rpath="
                             (assoc-ref outputs "out") "/lib")

              ;; Boost's 'context' library is not yet supported on mips64, so
              ;; we disable it.  The 'coroutine' library depends on 'context',
              ;; so we disable that too.
              ,@(if (string-prefix? "mips64" (or (%current-target-system)
                                                 (%current-system)))
                    '("--without-context"
                      "--without-coroutine" "--without-coroutine2")
                    '()))))
       `(#:modules ((ice-9 rdelim)
                    (ice-9 regex)
                    (srfi srfi-1)
                    (guix build gnu-build-system)
                    (guix build utils))
         #:phases
         (modify-phases %standard-phases
           (replace
            'configure
            (lambda* (#:key outputs #:allow-other-keys)
              (let ((out (assoc-ref outputs "out")))
                (substitute* '("libs/config/configure"
                               "libs/spirit/classic/phoenix/test/runtest.sh"
                               "tools/build/doc/bjam.qbk"
                               "tools/build/src/engine/execunix.c"
                               "tools/build/src/engine/Jambase"
                               "tools/build/src/engine/jambase.c")
                  (("/bin/sh") (which "sh")))

                (setenv "SHELL" (which "sh"))
                (setenv "CONFIG_SHELL" (which "sh"))

                (zero? (system* "./bootstrap.sh"
                                (string-append "--prefix=" out)
                                "--with-toolset=gcc")))))
           (replace
            'build
            (lambda* (#:key outputs #:allow-other-keys)
              (zero? (system* "./b2" ,@build-flags))))
           (replace
            'check
            ;; The provided method for running all tests (executing b2 in the
            ;; "status" directory) requires a large amount of disk space
            ;; (>20G) because it does not clean up build artifacts after
            ;; successfully running a test suite.  So instead we run each test
            ;; individually, which only requires ~7.7G.
            (lambda* (#:key outputs #:allow-other-keys)
              (let ((b2 (string-append (getcwd) "/b2"))
                    (test-dirs
                     ;; The instructions at
                     ;; http://www.boost.org/development/running_regression_tests.html
                     ;; to run b2 in each libs/<library>/test is not entirely
                     ;; accurate.  Some tests are in subdirectories and others
                     ;; in top-level directories.  So instead we read the list
                     ;; of test directories from status/Jamfile.v2
                     (let ((port (open-input-file "status/Jamfile.v2"))
                           (start-rx (make-regexp "^run-tests libs :"))
                           (end-rx (make-regexp "^[[:space:]]*;"))
                           (dir-rx (make-regexp "^[[:space:]]*([a-z0-9/_]+)")))
                       (let loop ((collecting #f)
                                  (dirs '()))
                         (let* ((line (read-line port))
                                (start (regexp-exec start-rx line))
                                (end (regexp-exec end-rx line)))
                           (cond
                            (start (loop #t dirs))
                            ((and collecting end)
                             (begin
                               (close-port port)
                               (reverse! dirs)))
                            (collecting
                             (loop #t (cons (match:substring
                                             (regexp-exec dir-rx line)
                                             1)
                                            dirs)))
                            (else (loop #f dirs)))))))
                    ;; Several libraries have known-failing test cases, so
                    ;; skip those.
                    (skip '(;; Some tests have not been updated for changes in
                            ;; Boost.Random,
                            ;; e.g. weighted_p_square_cumul_dist.cpp
                            "accumulators"
                            ;; Some tests fail with 'Network is unreachable'
                            "asio"
                            ;; ptr_list_inserter fails with 'check
                            ;; typeid(*--a_set.end()) == typeid(FooBar) has
                            ;; failed'
                            "assign"
                            ;; stl_concept_covering: error: no match for
                            ;; 'operator=='
                            "concept_check"
                            ;; bench_alloc.test: error: 'assert' was not
                            ;; declared in this scope.
                            "container/bench"
                            ;; Compilation failures: member_ccs,
                            ;; member_ccs_exact, nonmember_ccs,
                            ;; nonmember_ccs_exact.
                            "function_types"
                            ;; 10 compilation failures: adj_matrix_cc,
                            ;; adjacency_matrix_test,
                            ;; boykob_kolmahorov_max_flow_test,
                            ;; bundled_properties, csr_graph_test,
                            ;; cycle_ratio_tests, floy_warshall_test,
                            ;; matching_test, metric_tsp_approx, and
                            ;; test_graphs.
                            "graph"
                            ;; Compilation failure in concept_tests
                            "iterator"
                            ;; Compilation errors when boost is built with
                            ;; both shared and static libraries?
                            "lockfree"
                            ;; Loss of precision in test
                            ;; test_cpp_bin_float_io_1
                            "multiprecision"
                            ;; Compilation issues
                            "proto"
                            ;; error: 'BOOST_MESSAGE' was not declared in this
                            ;; scope.
                            "ptr_container"
                            ;; Compilation failures, e.g. voidptr - "error:
                            ;; no matching call to 'registry_lookup2'"
                            "python"
                            ;; error: expected initializer before ‘namespace’
                            "rational"
                            ;; error "lambda functions required"
                            "scope_exit"
                            ;; Compilation failures: karma_repo_subrule and
                            ;; qi_repo_subrule
                            "spirit/repository"
                            ;; error: inappropriate use of sizeof on
                            ;; incomplete type.
                            "statechart"
                            ;; fails Boost Inspection Report test
                            "timer"
                            ;; fail: run_random
                            "tr1"
                            ;; Executation fail: compressed_pair_test
                            "utility"
                            ;; Execution failures: "no variadic macro support
                            ;; in function ..."
                            "vmd"
                            ;; testwave test t_9_024.cpp fails
                            "wave")))
                (every                  ;stop immediately if any test fails
                 (lambda (dir)
                   (with-directory-excursion (string-append "libs/" dir)
                     (and (zero? (system* b2 ,@build-flags)) ;run tests
                          ;; Clean each test directory after successful run in
                          ;; order to minimize disk space requirements.
                          (zero? (system* b2 ,@build-flags "clean")))))
                 (remove (lambda (d)
                           (any (lambda (s)
                                  (string-prefix? s d))
                                skip))
                         test-dirs)))))
           (replace
            'install
            (lambda* (#:key outputs #:allow-other-keys)
              (zero? (system* "./b2" "install" ,@build-flags))))))))

    (home-page "http://boost.org")
    (synopsis "Peer-reviewed portable C++ source libraries")
    (description
     "A collection of libraries intended to be widely useful, and usable
across a broad spectrum of applications.")
    (license (license:x11-style "http://www.boost.org/LICENSE_1_0.txt"
                                "Some components have other similar licences."))))

(define-public mdds
  (package
    (name "mdds")
    (version "0.12.1")
    (source (origin
             (method url-fetch)
             (uri (string-append
                   "http://kohei.us/files/mdds/src/mdds_" version ".tar.bz2"))
             (sha256
              (base32
               "0gg8mb9kxh3wggh7njj1gf90xy27p0yq2cw88wqar9hhg2fmwmi3"))))
    (build-system gnu-build-system)
    (propagated-inputs
      `(("boost" ,boost))) ; inclusion of header files
    (home-page "https://code.google.com/p/multidimalgorithm/")
    (synopsis "Multi-dimensional C++ data structures and indexing algorithms")
    (description "Mdds (multi-dimensional data structure) provides a
collection of multi-dimensional data structures and indexing algorithms
for C++.  It includes flat segment trees, segment trees, rectangle sets,
point quad trees, multi-type vectors and multi-type matrices.")
    (license license:expat)))

debug log:

solving a69ebc2 ...
found a69ebc2 in https://yhetil.org/guix-devel/2d4c3c574717ab1fceddcfd58de7bf37@openmailbox.org/
found 0a644e8 in https://git.savannah.gnu.org/cgit/guix.git
preparing index
index prepared:
100644 0a644e89408b63f7830fccb77a3ac50a25442fed	gnu/packages/boost.scm

applying [1/1] https://yhetil.org/guix-devel/2d4c3c574717ab1fceddcfd58de7bf37@openmailbox.org/
diff --git a/gnu/packages/boost.scm b/gnu/packages/boost.scm
index 0a644e8..a69ebc2 100644

Checking patch gnu/packages/boost.scm...
Applied patch gnu/packages/boost.scm cleanly.

index at:
100644 a69ebc2042f5d10083061008c7931e860e4d2ccc	gnu/packages/boost.scm

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