From mboxrd@z Thu Jan 1 00:00:00 1970 From: Laura Lazzati Subject: Re: [outreach] Help trying to create R package Date: Thu, 18 Oct 2018 22:05:28 -0300 Message-ID: References: <20181016074412.54757b18@alma-ubu> <20181016082350.75757e6b@alma-ubu> <20181017001851.71543cc9@alma-ubu> <20181017091750.1c408b8d@alma-ubu> <20181018085424.541e9287@alma-ubu> <87va5zktpa.fsf@elephly.net> Mime-Version: 1.0 Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:58244) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1gDJEv-0004KY-6f for guix-devel@gnu.org; Thu, 18 Oct 2018 21:06:10 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1gDJEt-0001tn-L9 for guix-devel@gnu.org; Thu, 18 Oct 2018 21:06:09 -0400 Received: from mail-pf1-x431.google.com ([2607:f8b0:4864:20::431]:46022) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1gDJEt-0001ru-Al for guix-devel@gnu.org; Thu, 18 Oct 2018 21:06:07 -0400 Received: by mail-pf1-x431.google.com with SMTP id u12-v6so15672086pfn.12 for ; Thu, 18 Oct 2018 18:06:07 -0700 (PDT) In-Reply-To: List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: rekado@elephly.net Cc: Guix-devel On Thu, Oct 18, 2018 at 3:17 PM Laura Lazzati wrote: > > On Thu, Oct 18, 2018 at 3:15 PM Ricardo Wurmus wrote= : > > > > > > Hi Laura, > > > > > configure: checking for guile 2.2 > > > configure: found guile 2.2 > > > checking for guile-2.2... /usr/bin/guile-2.2 > > > checking for Guile version >=3D 2.2... 2.2.3 > > > checking for guild-2.2... no > > > checking for guile-config-2.2... no > > > checking for guile-tools-2.2... no > > > configure: error: 'guild' binary not found; please check your > > > guile-2.x installation. > > > > I recommend using =E2=80=9Cguix environment --pure guix=E2=80=9D when o= n a foreign > > distribution. > Yes, I am trying that right now :) I'll let you know after reading > Invoking guix environment and trying that. Hope this works > > I have tried lots of things today, not successfully. with guix environment guix, I get the same output that I get without using guix environment (I mean, it uses the installed guix that I tend to use generally) the output of which guix in both cases is: /home/laura/.config/guix/current/bin/guix with guix environment --pure guix --ad-hoc coreutils findutils which (or -C= ) I get, the output: Command 'lesspipe' is available in the following places * /bin/lesspipe * /usr/bin/lesspipe The command could not be located because '/bin:/usr/bin' is not included in the PATH environment variable. lesspipe: command not found There, I run which guix and get: which: no guix in (/gnu/store/khk3lpx1li9y5zxzdppn9wi4n5g1qsgs-profile/bin:/gnu/store/khk3lpx= 1li9y5zxzdppn9wi4n5g1qsgs-profile/sbin) The closest I got was by setting: PATH=3D$PATH:/usr/bin/:/bin PATH=3D$PATH:/usr/local/bin And since I still got the issue with guile, I went to /usr/bin/ and created a symlink sudo ln -s /gnu/store/p9wm67w3rfw3hlb9iljgvsfn84mz4w9d-guile-2.2.4 guile-2.= 2.4 (setting guile-2.2 that whas already there to a hidden file) Then the ./configure --localstatedir=3D/var Worked fine, as well as the make (echo $? of both 0) There, the result of which guix is: /usr/local/bin/guix ( a symlink to -> /var/guix/profiles/per-user/root/guix-profile/bin/guix) I could run the ./pre-inst-env guix package -i hello, took a while but work= ed. Complained about having to do: export PATH=3D"/home/laura/.guix-profile/bin${PATH:+:}$PATH" Did so. And finally I appended my r-aspi definition to cran.scm However, everything went wrong when trying to run: (sorry, the output is long and I also get the same output with ./pre-inst-env lint r-aspi) ./pre-inst-env guix build r-aspi ;;; note: source file /home/laura/guix/gnu/packages/cran.scm ;;; newer than compiled /home/laura/guix/gnu/packages/cran.go guix build: warning: failed to load '(gnu packages abiword)': exception thrown: # guix build: warning: failed to load '(gnu packages android)': In procedure module-lookup: Unbound variable: googletest guix build: warning: failed to load '(gnu packages avr)': In procedure module-lookup: Unbound variable: binutils guix build: warning: failed to load '(gnu packages axoloti)': In procedure module-lookup: Unbound variable: gcc-4.9 guix build: warning: failed to load '(gnu packages bioconductor)': In procedure module-lookup: Unbound variable: perl-module-build guix build: warning: failed to load '(gnu packages bootloaders)': no binding `bc' in module (gnu packages algebra) guix build: warning: failed to load '(gnu packages chemistry)': In procedure module-lookup: Unbound variable: python2-numpy guix build: warning: failed to load '(gnu packages commencement)': In procedure module-lookup: Unbound variable: gnu-make guix build: warning: failed to load '(gnu packages debug)': In procedure module-lookup: Unbound variable: gnu-make guix build: warning: failed to load '(gnu packages display-managers)': In procedure module-lookup: Unbound variable: gpgme guix build: warning: failed to load '(gnu packages games)': In procedure module-lookup: Unbound variable: unzip guix build: warning: failed to load '(gnu packages image-viewers)': In procedure module-lookup: Unbound variable: curl guix build: warning: failed to load '(gnu packages license)': In procedure module-lookup: Unbound variable: perl guix build: warning: failed to load '(gnu packages make-bootstrap)': In procedure module-lookup: Unbound variable: coreutils guix build: warning: failed to load '(gnu packages maven)': In procedure module-lookup: Unbound variable: java-plexus-container-default guix build: warning: failed to load '(gnu packages syndication)': In procedure module-lookup: Unbound variable: curl guix build: warning: failed to load '(gnu packages unrtf)': In procedure module-lookup: Unbound variable: coreutils guix build: error: r-aspi: unknown package > > > > Ricardo > > Regards, Laura