From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp2 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id eJMEE+TLt18TJAAA0tVLHw (envelope-from ) for ; Fri, 20 Nov 2020 14:00:04 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp2 with LMTPS id 0K20DuTLt18AeAAAB5/wlQ (envelope-from ) for ; Fri, 20 Nov 2020 14:00:04 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 154AE94042C for ; Fri, 20 Nov 2020 14:00:03 +0000 (UTC) Received: from localhost ([::1]:40398 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kg6xG-0004EB-Q9 for larch@yhetil.org; Fri, 20 Nov 2020 09:00:02 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:45776) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kg6x7-0004E4-2F for guix-devel@gnu.org; Fri, 20 Nov 2020 08:59:53 -0500 Received: from mail-qk1-x72d.google.com ([2607:f8b0:4864:20::72d]:42075) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1kg6x5-0004mu-H7; Fri, 20 Nov 2020 08:59:52 -0500 Received: by mail-qk1-x72d.google.com with SMTP id 199so8864422qkg.9; Fri, 20 Nov 2020 05:59:50 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=mime-version:references:in-reply-to:from:date:message-id:subject:to :cc:content-transfer-encoding; bh=EPquW8GReynIFBLYBrJf8xeJeCKfHPj9zXu+ADsgAEc=; b=Dfag8M1b5wQabCDO6E77Yw1jAGiVT42WRsHSWnlA988pSkkcI9TwBXwpDV0K7c/Cp/ dEVvRzQQkxJkXeogWTaZucc6wPwF7WfigN3e6hmtuUJeF95aBO8gaQl6/i0jQkuEyvBe 0aSjwbH6jsIt9bJZLoe+pxcvX9+u8PFt4/tYQEGLCD+OGGuAuQ8PcOxO+mh2hIuZPaFp wvY13P4buLoKT8brezSvSczBAq6AOQDzgLrpKR53QoEzWG4EoToOGIBrSdTt7QPC4tDj fNNWjJzQ6H1phWp5z9kolhKtNHgnErd/Onl2rGrgrslZY9DOdHknTafJkLgtPHJlMDQW kgCg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:mime-version:references:in-reply-to:from:date :message-id:subject:to:cc:content-transfer-encoding; bh=EPquW8GReynIFBLYBrJf8xeJeCKfHPj9zXu+ADsgAEc=; b=OnWUhP1iS1GpAPFDR65qhwP0GfUmaxr9DQ3qfpMd1Lss/dvskVn5beW+ku+HirN1Ie lLa1mHftCkKrzwrl8YqObSFLLXPP6vpEIOtNlaJ+ReVpluF+QNVOgUs61NgGqolbBnhG vAFAVI8LwLsIT4TM3pioBhqwnLmveA7iQv5XRC684NCwyloDLlWWmc/24B/XNcmG17ex EH2a1uaeQvgT80TtMCJfVrxOvtjryttCuTAsR7fSH98IIKGoGpi9TeltrN5hjH7kR3cs rKPsMjqjYwey576YHhdtL0CvPqJ0G7SYhP4YB3DEr0gXlo7IcYptPH+0jhGBLu7sSJUA efdQ== X-Gm-Message-State: AOAM533Ui9/Rohidh5+hL/5nx0DkMjyE6Fepzlgf9L+mWwExMAhxxx9E ztOayuhYBXzu6YlFS4EBNwuKVRblQJjdZpoTUeVup50VWLc= X-Google-Smtp-Source: ABdhPJwXY/jtJZA+zqLRNnDHvfbydIjF5wMn9RktgLiD3hQD77eOQog6DH1VOLUcy0NNNhy/IRBCXoR6KvnnX0n2rtw= X-Received: by 2002:a37:9ed3:: with SMTP id h202mr16459100qke.126.1605880790334; Fri, 20 Nov 2020 05:59:50 -0800 (PST) MIME-Version: 1.0 References: <86tutnmvyn.fsf@gmail.com> <63ad286432442f3c6c22acf60b50632d1a4d4b8d.camel@gnu.org> <0f3a95cbcbefec60a9a239f39eefa7a991272dc9.camel@gnu.org> <873615aw3m.fsf@elephly.net> <63ba88365933ab9878eaa040ee4190ffdebbc41a.camel@gnu.org> <87zh3c9mgh.fsf@elephly.net> In-Reply-To: <87zh3c9mgh.fsf@elephly.net> From: zimoun Date: Fri, 20 Nov 2020 14:59:39 +0100 Message-ID: Subject: Re: Updating to latest Bioconductor release To: Ricardo Wurmus Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable Received-SPF: pass client-ip=2607:f8b0:4864:20::72d; envelope-from=zimon.toutoune@gmail.com; helo=mail-qk1-x72d.google.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: guix-devel@gnu.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: Guix Devel Errors-To: guix-devel-bounces+larch=yhetil.org@gnu.org Sender: "Guix-devel" X-Scanner: ns3122888.ip-94-23-21.eu Authentication-Results: aspmx1.migadu.com; dkim=fail (headers rsa verify failed) header.d=gmail.com header.s=20161025 header.b=Dfag8M1b; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-devel-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-devel-bounces@gnu.org X-Spam-Score: 0.09 X-TUID: /ynVO2xXeK1Z Hi, On Fri, 20 Nov 2020 at 14:37, Ricardo Wurmus wrote: > > It'd be great if you could reset the branch pointer! :) > > Done! I rebased onto master and pushed to r-wip. Nice! Thanks. (You mean wip-r, right?) > Many of the commit messages were incomplete (didn=E2=80=99t mention all c= hanged > inputs) and used the wrong heading =E2=80=9Cgnu: Update r-foo to 1.2.3.= =E2=80=9D instead > of the more greppable =E2=80=9Cgnu: r-foo: Update to 1.2.3.=E2=80=9D. Just to understand for the next time: when should the commit upgrading the %bioconductor-version be done? First one or last one? (I am speaking of this kind of commit: ac6a55e68a6ed675a55abc5339f776613648= cb9d) > I also saw that r-rsubread fails to build. That's the thing where I do not understand the concept of WIP branch if it is not possible to rewrite history. Only one commit should do the fix. now e57bf84eb80d6ad23710f2cad3d4fdb44ce1aca5 updates but fails. How to proceed without adding another commit ending to master? Is the fix added to wip-r and then before rebase to master, do the local rebase (with reorder and squash) and push? I am sorry if my question about the Git workflow is naive, I am not used to work such way. :-) All the best, simon