Hi, I think I need your help to identify the right license for this package, I set bsd-3 only for convenience this is the original license ( https://github.com/pachterlab/kallisto/blob/master/license.txt) Do I need to use something like : (license (license:non-copyleft "file://src/COPYING" "See src/COPYING in the distribution.")))) * gnu/packages/bioinformatics.scm (kallisto): New variable. --- gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c60bedc..86026fd 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8502,3 +8502,31 @@ a specified false discovery rate. It also contains a number of utilities to explore the MS/MS results and assess missed and irregular enzymatic cleavages, mass measurement accuracy, etc.") (license license:artistic2.0))) + +(define-public kallisto + (package + (name "kallisto") + (version "0.43.0") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/pachterlab/kallisto/archive/v" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1d9cqf3lz6mm9kmqn47d99c6byn6q9l4ppgcafxrhcnrb2davhv9")))) + (build-system cmake-build-system) + (arguments + '(#:tests? #f)) ; no "check" target + (inputs + `(("zlib" ,zlib) + ("hdf5" ,hdf5))) + (home-page "https://pachterlab.github.io/kallisto") + (synopsis "Near-optimal RNA-Seq quantification") + (description + "Kallisto is a program for quantifying abundances of transcripts from +RNA-Seq data, or more generally of target sequences using high-throughput +sequencing reads. It is based on the novel idea of pseudoalignment for rapidly +determining the compatibility of reads with targets, without the need for alignment.") + (license license:bsd-3))) -- 1.9.1