From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ra Subject: Re: [PATCH] Add r-scran 1.2.0 and all its dependencies Date: Wed, 28 Dec 2016 09:26:52 +0000 Message-ID: References: <87k2aljr6j.fsf@elephly.net> <87h95pjojb.fsf@elephly.net> Mime-Version: 1.0 Content-Type: multipart/mixed; boundary=001a114cd3487290130544b4920f Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:37409) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1cMAVo-0006ay-69 for guix-devel@gnu.org; Wed, 28 Dec 2016 04:27:09 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1cMAVm-0001kZ-Vm for guix-devel@gnu.org; Wed, 28 Dec 2016 04:27:08 -0500 Received: from mail-wm0-x242.google.com ([2a00:1450:400c:c09::242]:35430) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1cMAVm-0001kG-H7 for guix-devel@gnu.org; Wed, 28 Dec 2016 04:27:06 -0500 Received: by mail-wm0-x242.google.com with SMTP id l2so35603240wml.2 for ; Wed, 28 Dec 2016 01:27:06 -0800 (PST) In-Reply-To: List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: Ricardo Wurmus Cc: guix-devel --001a114cd3487290130544b4920f Content-Type: multipart/alternative; boundary=001a114cd34872900f0544b4920d --001a114cd34872900f0544b4920d Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: quoted-printable Hi Ricardo, there was an issue with the r-shiny patch, the license was wrong. So this is the new set of patches. On Tue, Dec 27, 2016 at 10:25 PM Ra wrote: > Dear Ricardo, > I try to satisfy all the requirements. What do you think ? > In attachment the patches. > > Shiny now is in web.scm > > I reformat the description and fixed the synopsis. I also re checked the > licenses. > I have created a single patch for each r-package. > > -- > Raoul > > > > On Tue, Dec 27, 2016 at 6:06 PM Ra wrote: > > On Tue, Dec 27, 2016 at 6:00 PM Ricardo Wurmus wrote= : > > > Ra writes: > > > guix import cran --archive=3Dbioconductor scater > > > > I had to add the missing dependencies by hand, is there a recursive way > to do so? > > Yes, you can just pass =E2=80=9C--recursive=E2=80=9D or =E2=80=9C-r=E2=80= =9D and the importer will spit > out package expressions for all unpackaged dependencies. A current > limitation is that it doesn=E2=80=99t cross over from Bioconductor to CRA= N. > > Nice, I will try > > > > -- > Ricardo > > GPG: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC > http://elephly.net > > --001a114cd34872900f0544b4920d Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable
Hi Ricardo,
there was an issue with the r-shiny patch,= the license was wrong. So this is the new set of patches.



On Tue, = Dec 27, 2016 at 10:25 PM Ra <= ilpuccio.febo@gmail.com> wrote:
Dear Ricardo,
I try to satisfy all the requirements. What do you think ?
In attachment the patches.=C2=A0

Shiny now is i= n web.scm

I reformat the description and fixed the synopsis. I al= so re checked the licenses.
I have created a = single patch for each r-package.

--
Raoul



On Tue, Dec 27, 2016 at 6:06 PM Ra &l= t;ilpuccio.febo@gmail.com> wrote:
On Tue, Dec 27, 2016 at 6:00 PM Ricardo Wurmus <rekado@elephly.net> wrote:

Ra <ilpuccio.febo@gmail.com> writes:

> guix import cran --archive=3Dbioconductor scater
>
> I had to add the missing dependencies by hand, is there a recursive wa= y to do so?

Yes, you can just pass =E2=80=9C--recursive=E2=80=9D or =E2=80=9C-r=E2=80= =9D and the importer will spit
out package expressions for all unpackaged dependencies.=C2=A0 A current limitation is that it doesn=E2=80=99t cross over from Bioconductor to CRAN.=
Ni= ce, I will try
=C2=A0

--
Ricardo

GPG: BCA6 89B6 3655 3801 C3C6=C2=A0 2150 197A 5888 235F ACAC
http://elephly.net

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