From: Roel Janssen <roel@gnu.org>
To: guix-devel@gnu.org
Subject: [PATCH] gnu: Add r-mutationalpatterns.
Date: Thu, 27 Oct 2016 17:07:40 +0200 [thread overview]
Message-ID: <87zilpde4j.fsf@gnu.org> (raw)
Dear Guix,
The following patch adds another bioinformatics-related R package.
Kind regards,
Roel Janssen
From 92a36d068c90c96b2b5b4a7c8b4578ac3f6255cd Mon Sep 17 00:00:00 2001
From: Roel Janssen <roel@gnu.org>
Date: Thu, 27 Oct 2016 17:06:07 +0200
Subject: [PATCH] gnu: Add r-mutationalpatterns.
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): New variable.
---
gnu/packages/bioinformatics.scm | 34 ++++++++++++++++++++++++++++++++++
1 file changed, 34 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index fa35531..09bfb9d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7394,6 +7394,40 @@ library implementing most of the pipeline's features.")
@dfn{RNA-centric annotation system} (RCAS).")
(license license:agpl3+)))
+(define-public r-mutationalpatterns
+ (package
+ (name "r-mutationalpatterns")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "MutationalPatterns" version))
+ (sha256
+ (base32
+ "1a3c2bm0xx0q4gf98jiw74msmdf2fr8rbsdysd5ww9kqlzmsbr17"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-biostrings" ,r-biostrings)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-gridextra" ,r-gridextra)
+ ("r-iranges" ,r-iranges)
+ ("r-nmf" ,r-nmf)
+ ("r-plyr" ,r-plyr)
+ ("r-pracma" ,r-pracma)
+ ("r-reshape2" ,r-reshape2)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-variantannotation" ,r-variantannotation)))
+ (home-page "http://bioconductor.org/packages/MutationalPatterns/")
+ (synopsis "Package for extracting and visualizing mutational patterns in
+SNV data")
+ (description "This package provides an extensive toolset for the
+characterization and visualization of a wide range of mutational patterns
+in base substitution data.")
+ (license license:expat)))
+
(define-public emboss
(package
(name "emboss")
--
2.10.1
next reply other threads:[~2016-10-27 15:06 UTC|newest]
Thread overview: 3+ messages / expand[flat|nested] mbox.gz Atom feed top
2016-10-27 15:07 Roel Janssen [this message]
2016-10-27 17:22 ` [PATCH] gnu: Add r-mutationalpatterns Ricardo Wurmus
2016-10-27 18:09 ` Roel Janssen
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