From mboxrd@z Thu Jan 1 00:00:00 1970 From: Marius Bakke Subject: Re: [PATCH] gnu: Add seqtk. Date: Fri, 09 Sep 2016 13:54:33 +0100 Message-ID: <87y431qlme.fsf@ike.i-did-not-set--mail-host-address--so-tickle-me> References: <20150718090748.GA26418@jocasta.intra> <20160909110834.8581-1-donttrustben@gmail.com> <871t0ts0yu.fsf@ike.i-did-not-set--mail-host-address--so-tickle-me> Mime-Version: 1.0 Content-Type: text/plain Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:57815) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1biLKW-0008LL-S5 for guix-devel@gnu.org; Fri, 09 Sep 2016 08:54:53 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1biLKS-0002TD-Pz for guix-devel@gnu.org; Fri, 09 Sep 2016 08:54:51 -0400 Received: from out4-smtp.messagingengine.com ([66.111.4.28]:52030) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1biLKQ-0002Q4-Gg for guix-devel@gnu.org; Fri, 09 Sep 2016 08:54:48 -0400 In-Reply-To: <871t0ts0yu.fsf@ike.i-did-not-set--mail-host-address--so-tickle-me> List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: Ben Woodcroft , guix-devel@gnu.org Marius Bakke writes: > The program seems to bundle {khash,kseq}.h from htslib. Could you try > replacing them with the files directly from htslib? There are quite a > few examples of doing this already in bioinformatics.scm. The released version bundles a few unnecessary header files as well, that are removed in git. I think you can remove all ".h" files in an origin snippet and substitute references to khash.h and kseq.h before building. Cheers, Marius