From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp0 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id WMH1GBPIt1/1egAA0tVLHw (envelope-from ) for ; Fri, 20 Nov 2020 13:43:47 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp0 with LMTPS id iFbfFBPIt1/YEwAA1q6Kng (envelope-from ) for ; Fri, 20 Nov 2020 13:43:47 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 14AEC9403AA for ; Fri, 20 Nov 2020 13:43:47 +0000 (UTC) Received: from localhost ([::1]:46142 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kg6hV-0002dv-Uj for larch@yhetil.org; Fri, 20 Nov 2020 08:43:45 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:37638) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kg6e5-0006kq-7e for guix-devel@gnu.org; Fri, 20 Nov 2020 08:40:13 -0500 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21150) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kg6e3-0003nY-7I; Fri, 20 Nov 2020 08:40:12 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1605879607; cv=none; d=zohomail.com; s=zohoarc; b=leEWzLkjIalvD9Va8/uPpSL6C26ffxOAVFNWdmo7ke9lOB0TUKLUJoz2eu7DOkMiNNCGzaEiEeXIKuWec/R/iJeHY74r2i+DtEinqr3QL0WmMfdyeQZ9CfLpn71YyJxP+HMUH2ByWxiDCIB8zMPC7WGbk8ieynTRhDngX9KXb5Y= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1605879607; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=UeYqmx7sMwOfKWDwpO8zx5EufBZIX+CIY7wzuEBwIfg=; b=VqkKJR+pXRsijRzFvygVzY/K/QXFs/75g7nfHeQVUIKfJs5XV7w2aqM5+hJ9xKSZFAsKhfrPjjN7EHKFNL6TMza78D/WzCPVQ425CBPQBzoE7xh0COxe6wac7W0n93SCBCkGXDhKHNHz1U7b0trjnO2L1ZP3Gd3uV+T9dn9/avM= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1605879607; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:To:Cc:Subject:In-reply-to:Date:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding; bh=UeYqmx7sMwOfKWDwpO8zx5EufBZIX+CIY7wzuEBwIfg=; b=VReXQho0y05L9jdD+aHZd9H7tHU5lOhBU5MJVyhFJLWpJV2e6E8P8ScWo5UZKPqI uTIME0wHgy0QYwpynaNFCbo6REJq9G7O/waocKdOxZxNgjQVUDPd+omTG+DKdpMiP/n WelC5aMifN0bbWMN2HIRbXMvmDZy6IKtDvjiQemY= Received: from localhost (p54ad4f27.dip0.t-ipconnect.de [84.173.79.39]) by mx.zohomail.com with SMTPS id 1605879605087419.18827650060723; Fri, 20 Nov 2020 05:40:05 -0800 (PST) References: <86tutnmvyn.fsf@gmail.com> <63ad286432442f3c6c22acf60b50632d1a4d4b8d.camel@gnu.org> <0f3a95cbcbefec60a9a239f39eefa7a991272dc9.camel@gnu.org> <873615aw3m.fsf@elephly.net> <63ba88365933ab9878eaa040ee4190ffdebbc41a.camel@gnu.org> <87zh3c9mgh.fsf@elephly.net> User-agent: mu4e 1.4.13; emacs 27.1 From: Ricardo Wurmus To: Roel Janssen Subject: Re: Updating to latest Bioconductor release In-reply-to: <87zh3c9mgh.fsf@elephly.net> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Date: Fri, 20 Nov 2020 14:42:04 +0100 Message-ID: <87wnyg9mc3.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External Received-SPF: pass client-ip=136.143.188.51; envelope-from=rekado@elephly.net; helo=sender4-of-o51.zoho.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_NONE=-0.0001, RCVD_IN_MSPIKE_H2=-0.001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: guix-devel@gnu.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: Guix Devel Errors-To: guix-devel-bounces+larch=yhetil.org@gnu.org Sender: "Guix-devel" X-Scanner: ns3122888.ip-94-23-21.eu Authentication-Results: aspmx1.migadu.com; dkim=fail (headers rsa verify failed) header.d=elephly.net header.s=zoho header.b=VReXQho0; arc=reject (signature check failed: fail, {[1] = sig:zohomail.com:reject}); dmarc=none; spf=pass (aspmx1.migadu.com: domain of guix-devel-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-devel-bounces@gnu.org X-Spam-Score: 1.99 X-TUID: Ii2PXtAqyzVf Ricardo Wurmus writes: > There are some open questions: the changes to r-mutationalpatterns > invalidate the comment > > ;; These two packages are suggested packages > > above r-bsgenome-hsapiens-1000genomes-hs37d5 and > r-bsgenome-hsapiens-ucsc-hg19. Would be good to adjust the comment or > to move it down. > > I also saw that r-rsubread fails to build. And one more: The commit that updates %bioconductor-version (=E2=80=9Cimport: cran: Updat= e the Bioconductor version to 3.12.=E2=80=9D) should also change =E2=80=9Cbiocond= uctor-uri=E2=80=9D in (guix build-system r). This is still at 3.11. --=20 Ricardo