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From: Marius Bakke <mbakke@fastmail.com>
To: Ben Woodcroft <b.woodcroft@uq.edu.au>,
	"guix-devel@gnu.org" <guix-devel@gnu.org>
Subject: Re: [PATCH 2/3] gnu: Add python-pyxb.
Date: Sat, 24 Sep 2016 04:15:00 +0100	[thread overview]
Message-ID: <87vaxmxa2z.fsf@ike.i-did-not-set--mail-host-address--so-tickle-me> (raw)
In-Reply-To: <4cc91e33-1722-91e7-eda3-38b967fc1e73@uq.edu.au>

Ben Woodcroft <b.woodcroft@uq.edu.au> writes:

>> Htslib is propagated because it
>> is included by the installed samtools and bcftools headers; at least one
>> of pysams dependencies failed to build when it was a regular input.
> Ah, I see. Can this be avoided with patchelf?

I don't think so. The htslib headers need to be propagated for anything
that uses header files from pysam, since they contain contain code such
as "include <htslib/foo.h>". Perhaps you can update the comment to make
it more clear?

Patchelf is probably what made that work when htslib was bundled.

Cheers,
Marius

  reply	other threads:[~2016-09-24  3:15 UTC|newest]

Thread overview: 18+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2016-09-17 10:10 [PATCH 0/3] gnu: python2-pbcore: Update to 1.2.10 Marius Bakke
2016-09-17 10:10 ` [PATCH 1/3] gnu: python-pysam: Update to 0.9.1.4 Marius Bakke
2016-09-17 10:10 ` [PATCH 2/3] gnu: Add python-pyxb Marius Bakke
     [not found]   ` <3bd16b58-b3d1-d47c-2433-c3a721681463@uq.edu.au>
2016-09-20  6:34     ` Ben Woodcroft
2016-09-20  7:06       ` Ben Woodcroft
2016-09-21 21:14         ` Marius Bakke
2016-09-22  0:46           ` Ben Woodcroft
2016-09-22 15:15             ` Marius Bakke
2016-09-23  1:28               ` Ben Woodcroft
2016-09-23 15:56                 ` Marius Bakke
2016-09-23 16:06                   ` Marius Bakke
2016-09-24  0:23                   ` Ben Woodcroft
2016-09-24  3:15                     ` Marius Bakke [this message]
2016-09-26 11:15                       ` Ben Woodcroft
2016-09-26 18:32                         ` Marius Bakke
2016-09-27 11:01                           ` Ben Woodcroft
2016-09-30 20:12                           ` Ludovic Courtès
2016-09-17 10:10 ` [PATCH 3/3] gnu: python2-pbcore: Update to 1.2.10 Marius Bakke

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