From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp0 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id qDgnDHXvol+pAwAA0tVLHw (envelope-from ) for ; Wed, 04 Nov 2020 18:14:13 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp0 with LMTPS id 2KDZB3Xvol8vUQAA1q6Kng (envelope-from ) for ; Wed, 04 Nov 2020 18:14:13 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 92363940111 for ; Wed, 4 Nov 2020 18:14:12 +0000 (UTC) Received: from localhost ([::1]:55668 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kaNIR-0007tu-Gt for larch@yhetil.org; Wed, 04 Nov 2020 13:14:11 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:45716) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kaNHw-0007q2-3i for guix-devel@gnu.org; Wed, 04 Nov 2020 13:13:40 -0500 Received: from mail-wm1-x32e.google.com ([2a00:1450:4864:20::32e]:40170) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1kaNHq-00069a-2q for guix-devel@gnu.org; Wed, 04 Nov 2020 13:13:39 -0500 Received: by mail-wm1-x32e.google.com with SMTP id k18so3205100wmj.5 for ; Wed, 04 Nov 2020 10:13:33 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:subject:date:message-id:mime-version :content-transfer-encoding; bh=Pu+0TkOZowMAsVYjde5ePxsE2fjIofeUlgvZ5RO04ug=; b=lJHDjFa8/THgxCT6/ZRQWT0RMPcDAhHBl2iAdud/rPYD8H61mT0Bzb0etPWXv4t2eo BXlA4jU2wiTNgC9FFohMGo4JA7SSY9U+XwB7msIm0SFDz1Y0busaD78hLeHxNfKAUuaW v9TschCENCpDq8X8J72rpdXgiYwmTC47iChew6pNGLzaRKx66eNHfiNbnpTM9PiyA5FP ONQ9uErfUUQVKa9WWacE7qo/JRbn3k3fjrlvudJEXenFwNmjGi+L8MHDsKIObzwrAy+8 SwsdYD3oaBajf6eCdiUIZAXVx6qJnlC0bHprYLbCLl7hrC7kfT3A+Vx9hMrRfRYXjnBz I7Nw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:subject:date:message-id:mime-version :content-transfer-encoding; bh=Pu+0TkOZowMAsVYjde5ePxsE2fjIofeUlgvZ5RO04ug=; b=HGFFHejHyNwJbOOoD+E2N8N6ABGTkyV+q8jF2req/3Uve+a+zvIK+grh5vZAYvKYGp olt9lbFvCT2AH6afCi9++sjq00cfJhlcMrxEiQE+wuWvdWHt/1oNyD+4svlosA5T1fKd /ya+mJQ9yXTtGV3A8lHe2RTXWwHl20Axr96ZEFxnLXjmqrziE7GtxVzOOC8RksWiZvwR h/PmI0RY+AgYgv/LbTcoAQzNRfrccDdczIz+dzbaQzj0aq+N9XXoF53vQFFN5L2TjZZg TATHlxxF3lK8JmQajzvIGFTa60l0ajJWxb/lef52djdlouqSKUN3V+wItjUE54DnXxZ3 Y93Q== X-Gm-Message-State: AOAM530KcCjE5hCF6wkUHB2scZ/q7oeHOuhlH8u3FntM+3KnAoN2Ycjp TjbBKh0qyrLIi7MF2vbTTiIQTsY4S0k= X-Google-Smtp-Source: ABdhPJxs33j9h5GQjzoEvnivFNIffLVaPHh9YJi4/XkiYEclJh04f4UXM28NWYM7lZ18xgjrxHICuA== X-Received: by 2002:a1c:20d0:: with SMTP id g199mr6352206wmg.68.1604513611753; Wed, 04 Nov 2020 10:13:31 -0800 (PST) Received: from pfiuh02 ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id e3sm3783301wrn.32.2020.11.04.10.13.31 for (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 04 Nov 2020 10:13:31 -0800 (PST) From: zimoun To: guix-devel@gnu.org Subject: =?utf-8?Q?=E2=80=9Cguix?= pack -RR =?utf-8?Q?r=E2=80=9C?= fails? Date: Wed, 04 Nov 2020 19:13:30 +0100 Message-ID: <87v9eldm7p.fsf@gmail.com> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Received-SPF: pass client-ip=2a00:1450:4864:20::32e; envelope-from=zimon.toutoune@gmail.com; helo=mail-wm1-x32e.google.com X-detected-operating-system: by eggs.gnu.org: No matching host in p0f cache. That's all we know. X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: guix-devel@gnu.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+larch=yhetil.org@gnu.org Sender: "Guix-devel" X-Scanner: ns3122888.ip-94-23-21.eu Authentication-Results: aspmx1.migadu.com; dkim=pass header.d=gmail.com header.s=20161025 header.b=lJHDjFa8; dmarc=pass (policy=none) header.from=gmail.com; spf=pass (aspmx1.migadu.com: domain of guix-devel-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-devel-bounces@gnu.org X-Spam-Score: 0.79 X-TUID: 42wLFrWh2VCa Dear, Using Guix fd0ef0e, I run: --8<---------------cut here---------------start------------->8--- rsync -av --progress \ $(guix pack -RR --save-provenance \ -S /bin=3Dbin \ -S /etc=3Detc \ -S /include=3Dinclude \ -S /lib=3Dlib \ -S /share=3Dshare \ -S /site-library=3Dsite-library \ r) \ cluster:/path/to/my/stuff --8<---------------cut here---------------end--------------->8--- then log via SSH to cluster and untar the pack. --8<---------------cut here---------------start------------->8--- $ ls -ahl total 422M drwxrwxr-x 3 sitour sitour 3.8K Nov 4 19:05 . drwxrwxrwx. 15 root root 3.8K Nov 4 19:02 .. -r--r--r-- 1 sitour sitour 421M Jan 1 1970 5n55mgjcj33s700g91x0zzf3ngfl= nba7-tarball-pack.tar.gz lrwxrwxrwx 1 sitour sitour 54 Nov 4 19:05 bin -> gnu/store/fvvn6mc4s7p= 52frdlsfj502k4zbqb9j7-profile/bin lrwxrwxrwx 1 sitour sitour 54 Nov 4 19:05 etc -> gnu/store/fvvn6mc4s7p= 52frdlsfj502k4zbqb9j7-profile/etc drwxrwxr-x 3 sitour sitour 3.8K Nov 4 19:03 gnu lrwxrwxrwx 1 sitour sitour 58 Nov 4 19:05 include -> gnu/store/fvvn6mc= 4s7p52frdlsfj502k4zbqb9j7-profile/include lrwxrwxrwx 1 sitour sitour 54 Nov 4 19:05 lib -> gnu/store/fvvn6mc4s7p= 52frdlsfj502k4zbqb9j7-profile/lib lrwxrwxrwx 1 sitour sitour 56 Nov 4 19:05 share -> gnu/store/fvvn6mc4s= 7p52frdlsfj502k4zbqb9j7-profile/share lrwxrwxrwx 1 sitour sitour 63 Nov 4 19:05 site-library -> gnu/store/fv= vn6mc4s7p52frdlsfj502k4zbqb9j7-profile/site-library --8<---------------cut here---------------end--------------->8--- The usual =E2=80=98./bin/R=E2=80=99 fails with: --8<---------------cut here---------------start------------->8--- $ ./bin/R : unsupported Guix execution engine; ignoring ./bin/R R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out" [...] *** caught segfault *** address 0x7f44f4b11008, cause 'memory not mapped' --8<---------------cut here---------------end--------------->8--- and then has to be killed. Last, --8<---------------cut here---------------start------------->8--- $ gdb ./bin/R GNU gdb (GDB) Red Hat Enterprise Linux (7.2-92.el6) Copyright (C) 2010 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Type "show copying" and "show warranty" for details. This GDB was configured as "x86_64-redhat-linux-gnu". For bug reporting instructions, please see: ... Reading symbols from /data2/tmp/foo/gnu/store/yz0zww6i4pafvwh6ysmqxr5pm72ks= 7lv-r-minimal-4.0.3R/bin/R...(no debugging symbols found)...done. (gdb) run Starting program: /data2/tmp/foo/gnu/store/yz0zww6i4pafvwh6ysmqxr5pm72ks7lv= -r-minimal-4.0.3R/bin/R=20 : unsupported Guix execution engine; ignoring /data2/tmp/foo/gnu/store/yz0zww6i4pafvwh6ysmqxr5pm72ks7lv-r-minimal-4.0.3R/= bin/Rprocess 36927 is executing new program: /data2/tmp/foo/gnu/store/jwdvn= klncaqw15376vbbr1vgpfr17j18-proot-static-5.1.0/bin/proot Detaching after fork from child process 36930. R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-unknown-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. Error: package or namespace load failed for 'grDevices' in dyn.load(file, D= LLpath =3D DLLpath, ...): unable to load shared object '/gnu/store/nqqhaz59gdr5q6mb6mw9dd8jk133rna2-= r-minimal-4.0.3/lib/R/library/grDevices/libs/grDevices.so': /gnu/store/nqqhaz59gdr5q6mb6mw9dd8jk133rna2-r-minimal-4.0.3/lib/R/library= /grDevices/libs/grDevices.so: cannot open shared object file: Bad address Error: package or namespace load failed for 'graphics' in dyn.load(file, DL= Lpath =3D DLLpath, ...): unable to load shared object '/gnu/store/nqqhaz59gdr5q6mb6mw9dd8jk133rna2-= r-minimal-4.0.3/lib/R/library/grDevices/libs/grDevices.so': /gnu/store/nqqhaz59gdr5q6mb6mw9dd8jk133rna2-r-minimal-4.0.3/lib/R/library= /grDevices/libs/grDevices.so: cannot open shared object file: Bad address Error: package or namespace load failed for 'stats' in dyn.load(file, DLLpa= th =3D DLLpath, ...): unable to load shared object '/gnu/store/nqqhaz59gdr5q6mb6mw9dd8jk133rna2-= r-minimal-4.0.3/lib/R/library/grDevices/libs/grDevices.so': /gnu/store/nqqhaz59gdr5q6mb6mw9dd8jk133rna2-r-minimal-4.0.3/lib/R/library= /grDevices/libs/grDevices.so: cannot open shared object file: Bad address During startup - Warning messages: 1: package 'grDevices' in options("defaultPackages") was not found=20 2: package 'graphics' in options("defaultPackages") was not found=20 3: package 'stats' in options("defaultPackages") was not found=20 4: Setting LC_CTYPE failed, using "C"=20 5: Setting LC_COLLATE failed, using "C"=20 6: Setting LC_TIME failed, using "C"=20 7: Setting LC_MESSAGES failed, using "C"=20 8: Setting LC_MONETARY failed, using "C"=20 9: Setting LC_PAPER failed, using "C"=20 10: Setting LC_MEASUREMENT failed, using "C"=20 > --8<---------------cut here---------------end--------------->8--- The cluster machine is an old kernel: --8<---------------cut here---------------start------------->8--- HEAD$ uname -a Linux HEAD 2.6.32-573.8.1.el6.x86_64 #1 SMP Tue Nov 10 18:01:38 UTC 2015 x8= 6_64 x86_64 x86_64 GNU/Linux --8<---------------cut here---------------end--------------->8--- What do I miss? All the best, simon