From mboxrd@z Thu Jan 1 00:00:00 1970 From: Mark H Weaver Subject: Re: [PATCH] Add preseq. Date: Wed, 08 Jul 2015 18:37:37 -0400 Message-ID: <87si8yl1hq.fsf@netris.org> References: <87r3osronp.fsf@gnu.org> <87egkrq5xa.fsf@gnu.org> <87k2uakdpm.fsf@gnu.org> Mime-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:51494) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1ZCxyT-0002WT-Mw for guix-devel@gnu.org; Wed, 08 Jul 2015 18:37:54 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1ZCxyQ-0002Lh-B3 for guix-devel@gnu.org; Wed, 08 Jul 2015 18:37:53 -0400 In-Reply-To: <87k2uakdpm.fsf@gnu.org> ("Ludovic \=\?utf-8\?Q\?Court\=C3\=A8s\=22'\?\= \=\?utf-8\?Q\?s\?\= message of "Wed, 08 Jul 2015 14:59:01 +0200") List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org To: Ludovic =?utf-8?Q?Court=C3=A8s?= Cc: guix-devel ludo@gnu.org (Ludovic Court=C3=A8s) writes: > Ricardo Wurmus skribis: > >> From e3bd0a861121c441b44d77d30f2aaddb766b49c2 Mon Sep 17 00:00:00 2001 >> From: Ricardo Wurmus >> Date: Tue, 23 Jun 2015 10:54:00 +0200 >> Subject: [PATCH 2/2] gnu: Add preseq. >> >> * gnu/packages/bioinformatics.scm (preseq): New variable. > > Please add the .patch files to the commit log and to the .am file. > > OK with this change. preseq failed to build on Hydra on x86_64 and mips64el. As I write this, the results are not yet in for i686. http://hydra.gnu.org:3000/job/gnu/master/preseq-1.0.2.x86_64-linux http://hydra.gnu.org:3000/job/gnu/master/preseq-1.0.2.mips64el-linux http://hydra.gnu.org:3000/job/gnu/master/preseq-1.0.2.i686-linux Here's the relevant build log excerpt for x86_64: --8<---------------cut here---------------start------------->8--- starting phase `use-samtools-headers' Backtrace: In ice-9/boot-9.scm: 157: 15 [catch #t # ...] In unknown file: ?: 14 [apply-smob/1 #] In ice-9/boot-9.scm: 63: 13 [call-with-prompt prompt0 ...] In ice-9/eval.scm: 432: 12 [eval # #] In ice-9/boot-9.scm: 2401: 11 [save-module-excursion #] 4050: 10 [#] 1724: 9 [%start-stack load-stack ...] 1729: 8 [#] In unknown file: ?: 7 [primitive-load "/gnu/store/6pzf2jhf9syyc02wbgl9mxma4wf2qxj2-preseq= -1.0.2-guile-builder"] In ice-9/eval.scm: 387: 6 [eval # ()] In srfi/srfi-1.scm: 830: 5 [every1 # ...] In /gnu/store/l1019wb5yzbar26cxxqrm88xkbn5gwv1-module-import/guix/build/gnu= -build-system.scm: 588: 4 [# #] In ice-9/eval.scm: 432: 3 [eval # #] In srfi/srfi-1.scm: 619: 2 [for-each # #] In /gnu/store/l1019wb5yzbar26cxxqrm88xkbn5gwv1-module-import/guix/build/uti= ls.scm: 486: 1 [with-atomic-file-replacement "smithlab_cpp/SAM.cpp" ...] In unknown file: ?: 0 [mkstemp! "smithlab_cpp/SAM.cpp.XXXXXX"] ERROR: In procedure mkstemp!: ERROR: In procedure mkstemp!: No such file or directory builder for `/gnu/store/2ll28ypms57h0k44f4mmclhw9dz3ccvm-preseq-1.0.2.drv' = failed with exit code 1 @ build-failed /gnu/store/2ll28ypms57h0k44f4mmclhw9dz3ccvm-preseq-1.0.2.drv= - 1 builder for `/gnu/store/2ll28ypms57h0k44f4mmclhw9dz3ccvm-preseq-1.0.2.= drv' failed with exit code 1 guix build: error: build failed: build of `/gnu/store/2ll28ypms57h0k44f4mmc= lhw9dz3ccvm-preseq-1.0.2.drv' failed --8<---------------cut here---------------end--------------->8--- Mark