From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ricardo Wurmus Subject: Re: bioinformatics.scm vs bioconductor.scm ? Date: Thu, 20 Dec 2018 09:46:45 +0100 Message-ID: <87mup0shze.fsf@elephly.net> References: <87a7lb5rza.fsf@elephly.net> <87y38u52xq.fsf@elephly.net> <87mup2tpwj.fsf@elephly.net> Mime-Version: 1.0 Content-Type: text/plain Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:51262) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1gZvdK-0002EW-DW for guix-devel@gnu.org; Thu, 20 Dec 2018 05:32:51 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1gZvdH-00009v-6f for guix-devel@gnu.org; Thu, 20 Dec 2018 05:32:50 -0500 Received: from sender-of-o53.zoho.com ([135.84.80.218]:21719) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1gZvdG-00008C-Rn for guix-devel@gnu.org; Thu, 20 Dec 2018 05:32:47 -0500 In-reply-to: <87mup2tpwj.fsf@elephly.net> List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: zimoun Cc: Guix Devel Ricardo Wurmus writes: >> Is the bioconductor importer usable from `guix import` ? > > yes. You may encounter minor problems when using the recursive > bioconductor importer, as it may try to look up CRAN packages on > Bioconductor. This is now fixed in commit 10a1cacb1. The importer will retry the import from CRAN when the package cannot be found on Bioconductor. So this works now: ./pre-inst-env guix import cran -a bioconductor -r flowCore -- Ricardo