From mboxrd@z Thu Jan 1 00:00:00 1970 From: Roel Janssen Subject: [PATCH 3/7] gnu: Add r-biocviews. Date: Thu, 15 Sep 2016 13:38:10 +0200 Message-ID: <87intxs89p.fsf@gnu.org> Mime-Version: 1.0 Content-Type: text/plain Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:33878) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bkUyn-0001iT-N4 for guix-devel@gnu.org; Thu, 15 Sep 2016 07:37:22 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1bkUyh-0004WV-Lu for guix-devel@gnu.org; Thu, 15 Sep 2016 07:37:20 -0400 Received: from fencepost.gnu.org ([2001:4830:134:3::e]:34669) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bkUyh-0004Vd-II for guix-devel@gnu.org; Thu, 15 Sep 2016 07:37:15 -0400 Received: from ip-80-113-14-101.ip.prioritytelecom.net ([80.113.14.101]:51565 helo=roel-tp) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_256_CBC_SHA1:256) (Exim 4.82) (envelope-from ) id 1bkUyf-0005qF-Vz for guix-devel@gnu.org; Thu, 15 Sep 2016 07:37:14 -0400 List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: guix-devel@gnu.org * gnu/packages/bioinformatics.scm (r-biocviews): New variable. --- gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 3d607cc..fa32075 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5333,6 +5333,34 @@ CRAN, and (some) github packages.") the graph algorithms contained in the Boost library.") (license license:artistic2.0))) +(define-public r-biocviews + (package + (name "r-biocviews") + (version "1.40.1") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "biocViews" version)) + (sha256 + (base32 + "1d1g06zwx3xhc07mdhs5x31730xw08fg3x73xyfj0qdy2ykww3f9")))) + (properties + `((upstream-name . "biocViews"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-graph" ,r-graph) + ("r-rbgl" ,r-rbgl) + ("r-rcurl" ,r-rcurl) + ("r-xml" ,r-xml) + ("r-knitr" ,r-knitr) + ("r-runit" ,r-runit))) + (home-page "http://bioconductor.org/packages/Biocviews") + (synopsis "Bioconductor structures for vocabularies and narratives of +views") + (description "This package provides structures for vocabularies and +narratives of views for Bioconductor packages.") + (license license:artistic2.0))) + (define-public r-dnacopy (package (name "r-dnacopy") -- 2.10.0