From: Ricardo Wurmus <rekado@elephly.net>
To: Ra <ilpuccio.febo@gmail.com>
Cc: guix-devel <guix-devel@gnu.org>
Subject: Re: [PATCH] Add r-scran 1.2.0 and all its dependencies
Date: Tue, 27 Dec 2016 17:59:52 +0100 [thread overview]
Message-ID: <87h95pjojb.fsf@elephly.net> (raw)
In-Reply-To: <CACQsWTO2OpRezWyW9CSWisHRcFeCTNnVxK6qOqC+J8LDYLj_2w@mail.gmail.com>
Ra <ilpuccio.febo@gmail.com> writes:
> guix import cran --archive=bioconductor scater
>
> I had to add the missing dependencies by hand, is there a recursive way to do so?
Yes, you can just pass “--recursive” or “-r” and the importer will spit
out package expressions for all unpackaged dependencies. A current
limitation is that it doesn’t cross over from Bioconductor to CRAN.
--
Ricardo
GPG: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC
http://elephly.net
next prev parent reply other threads:[~2016-12-27 17:00 UTC|newest]
Thread overview: 9+ messages / expand[flat|nested] mbox.gz Atom feed top
2016-12-27 9:14 [PATCH] Add r-scran 1.2.0 and all its dependencies Ra
2016-12-27 16:02 ` Ricardo Wurmus
2016-12-27 16:34 ` Ra
2016-12-27 16:59 ` Ricardo Wurmus [this message]
2016-12-27 17:06 ` Ra
2016-12-27 21:25 ` Ra
2016-12-28 9:26 ` Ra
2016-12-29 21:52 ` Ricardo Wurmus
2017-01-31 21:47 ` Ricardo Wurmus
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
List information: https://guix.gnu.org/
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=87h95pjojb.fsf@elephly.net \
--to=rekado@elephly.net \
--cc=guix-devel@gnu.org \
--cc=ilpuccio.febo@gmail.com \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
Code repositories for project(s) associated with this public inbox
https://git.savannah.gnu.org/cgit/guix.git
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).