* Re: 41/92: gnu: r-iranges: Update to 2.14.12. [not found] ` <20181030204849.9DE7C2048D@vcs0.savannah.gnu.org> @ 2018-11-07 0:22 ` Mark H Weaver 2018-11-07 7:29 ` Ricardo Wurmus 0 siblings, 1 reply; 2+ messages in thread From: Mark H Weaver @ 2018-11-07 0:22 UTC (permalink / raw) To: Ricardo Wurmus; +Cc: guix-devel Hi Ricardo, rekado@elephly.net (Ricardo Wurmus) writes: > rekado pushed a commit to branch master > in repository guix. > > commit e563acb96b1d485b733484a81869144b2793c41a > Author: Ricardo Wurmus <rekado@elephly.net> > Date: Tue Oct 30 07:44:32 2018 +0100 > > gnu: r-iranges: Update to 2.14.12. > > * gnu/packages/bioinformatics.scm (r-iranges): Update to 2.14.12. Hydra failed to download the source tarball for IRanges-2.14.12, and I can't build it locally either: --8<---------------cut here---------------start------------->8--- mhw@jojen ~$ guix build -S r-iranges The following derivation will be built: /gnu/store/0wsvsrb2888fv8y6w511lwrwkphdga61-IRanges_2.14.12.tar.gz.drv building /gnu/store/0wsvsrb2888fv8y6w511lwrwkphdga61-IRanges_2.14.12.tar.gz.drv... Starting download of /gnu/store/ydsyylgwyqi7ljvzv01l8zrnc4jx5a4r-IRanges_2.14.12.tar.gz From https://bioconductor.org/packages/release/bioc/src/contrib/IRanges_2.14.12.tar.gz... download failed "https://bioconductor.org/packages/release/bioc/src/contrib/IRanges_2.14.12.tar.gz" 404 "Not Found" Starting download of /gnu/store/ydsyylgwyqi7ljvzv01l8zrnc4jx5a4r-IRanges_2.14.12.tar.gz From https://bioconductor.org/packages/3.7/bioc/src/contrib/Archive/IRanges_2.14.12.tar.gz... download failed "https://bioconductor.org/packages/3.7/bioc/src/contrib/Archive/IRanges_2.14.12.tar.gz" 404 "Not Found" Starting download of /gnu/store/ydsyylgwyqi7ljvzv01l8zrnc4jx5a4r-IRanges_2.14.12.tar.gz From http://mirror.hydra.gnu.org/file/IRanges_2.14.12.tar.gz/sha256/1ar8sqqgjdy00dbgrxnacqy6gwir5xax76yf0vjxi2vj2skqb0kn... download failed "http://mirror.hydra.gnu.org/file/IRanges_2.14.12.tar.gz/sha256/1ar8sqqgjdy00dbgrxnacqy6gwir5xax76yf0vjxi2vj2skqb0kn" 404 "Not Found" Starting download of /gnu/store/ydsyylgwyqi7ljvzv01l8zrnc4jx5a4r-IRanges_2.14.12.tar.gz From http://tarballs.nixos.org/sha256/1ar8sqqgjdy00dbgrxnacqy6gwir5xax76yf0vjxi2vj2skqb0kn... download failed "http://tarballs.nixos.org/sha256/1ar8sqqgjdy00dbgrxnacqy6gwir5xax76yf0vjxi2vj2skqb0kn" 404 "Not Found" failed to download "/gnu/store/ydsyylgwyqi7ljvzv01l8zrnc4jx5a4r-IRanges_2.14.12.tar.gz" from ("https://bioconductor.org/packages/release/bioc/src/contrib/IRanges_2.14.12.tar.gz" "https://bioconductor.org/packages/3.7/bioc/src/contrib/Archive/IRanges_2.14.12.tar.gz") builder for `/gnu/store/0wsvsrb2888fv8y6w511lwrwkphdga61-IRanges_2.14.12.tar.gz.drv' failed to produce output path `/gnu/store/ydsyylgwyqi7ljvzv01l8zrnc4jx5a4r-IRanges_2.14.12.tar.gz' build of /gnu/store/0wsvsrb2888fv8y6w511lwrwkphdga61-IRanges_2.14.12.tar.gz.drv failed View build log at '/var/log/guix/drvs/0w/svsrb2888fv8y6w511lwrwkphdga61-IRanges_2.14.12.tar.gz.drv.bz2'. guix build: error: build failed: build of `/gnu/store/0wsvsrb2888fv8y6w511lwrwkphdga61-IRanges_2.14.12.tar.gz.drv' failed mhw@jojen ~$ --8<---------------cut here---------------end--------------->8--- Could you take a look? Thanks, Mark ^ permalink raw reply [flat|nested] 2+ messages in thread
* Re: 41/92: gnu: r-iranges: Update to 2.14.12. 2018-11-07 0:22 ` 41/92: gnu: r-iranges: Update to 2.14.12 Mark H Weaver @ 2018-11-07 7:29 ` Ricardo Wurmus 0 siblings, 0 replies; 2+ messages in thread From: Ricardo Wurmus @ 2018-11-07 7:29 UTC (permalink / raw) To: Mark H Weaver; +Cc: guix-devel Hi Mark, > Hydra failed to download the source tarball for IRanges-2.14.12, and I > can't build it locally either: > > --8<---------------cut here---------------start------------->8--- > mhw@jojen ~$ guix build -S r-iranges > The following derivation will be built: > /gnu/store/0wsvsrb2888fv8y6w511lwrwkphdga61-IRanges_2.14.12.tar.gz.drv > building /gnu/store/0wsvsrb2888fv8y6w511lwrwkphdga61-IRanges_2.14.12.tar.gz.drv... > > Starting download of /gnu/store/ydsyylgwyqi7ljvzv01l8zrnc4jx5a4r-IRanges_2.14.12.tar.gz > From https://bioconductor.org/packages/release/bioc/src/contrib/IRanges_2.14.12.tar.gz... > download failed "https://bioconductor.org/packages/release/bioc/src/contrib/IRanges_2.14.12.tar.gz" 404 "Not Found" > > Starting download of /gnu/store/ydsyylgwyqi7ljvzv01l8zrnc4jx5a4r-IRanges_2.14.12.tar.gz > From https://bioconductor.org/packages/3.7/bioc/src/contrib/Archive/IRanges_2.14.12.tar.gz... > download failed "https://bioconductor.org/packages/3.7/bioc/src/contrib/Archive/IRanges_2.14.12.tar.gz" 404 "Not Found" Since the upgrade Bioconductor 3.8 has been released, so the new archive URL would now be: https://bioconductor.org/packages/3.8/bioc/src/contrib/Archive/IRanges_2.14.12.tar.gz (I still have the source tarball for this version from before the upgrade to 3.8.) Unfortunately, Bioconductor does not keep an archive, so this particular version of IRanges has completely disappeared since the upgrade to 2.16.0. I’ll upgrade all Bioconductor packages today. -- Ricardo ^ permalink raw reply [flat|nested] 2+ messages in thread
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[not found] ` <20181030204849.9DE7C2048D@vcs0.savannah.gnu.org>
2018-11-07 0:22 ` 41/92: gnu: r-iranges: Update to 2.14.12 Mark H Weaver
2018-11-07 7:29 ` Ricardo Wurmus
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