From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp2 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id QLAkMWkOWl/vIQAA0tVLHw (envelope-from ) for ; Thu, 10 Sep 2020 11:30:49 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp2 with LMTPS id IJDhLGkOWl+FLwAAB5/wlQ (envelope-from ) for ; Thu, 10 Sep 2020 11:30:49 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 5642D9401D0 for ; Thu, 10 Sep 2020 11:30:49 +0000 (UTC) Received: from localhost ([::1]:37436 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kGKmu-0005YQ-4h for larch@yhetil.org; Thu, 10 Sep 2020 07:30:48 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:35670) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kGKme-0005XY-OF; Thu, 10 Sep 2020 07:30:32 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21181) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kGKmb-0002Bn-EE; Thu, 10 Sep 2020 07:30:32 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1599737425; cv=none; d=zohomail.com; s=zohoarc; b=l0+EPmiR6ncoMLljr68UCWaYS+NGVM4Kb5E4JmYgZcDMS+GUaqQNiTYEmx/dig0XS1Yd5ewzX1HoIi3Kxo67b0rXKZOL0ZLbKXBTh6DqbE663+IBRmNM3/rxefAgZAm5x9csWgO/To4e7PD6tDXgCiM3dGWNSX5VW09fkufQFb0= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1599737425; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=A6ubWq9eSg7zhgH/w4rVjNCqpoGToMjUfGz6FVWuXhs=; b=XyG7XUZ3TaRpRsKVb3O18YrA2rmY4EDtDqc159CTqOH28Bgx1L4WqgdLpN2KmBAjSJTWCVkUgtE3Uo/DuZFlO569Efrt0T4fGwi1XdhJ68y089Hhyh9G9X1+7RcD+HEyh3z1lJ4QEJ6mJJqT4efjbjgwlhYvNq5ktHBR6T2SxSE= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1599737425; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:To:Cc:Subject:In-reply-to:Date:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding; bh=A6ubWq9eSg7zhgH/w4rVjNCqpoGToMjUfGz6FVWuXhs=; b=QlhQsh8Kgbdsn+LdK8WOabth0o5azzf1Hqk4ZEQQTGszFaXFNFxtk2eb7WxofR4C Mou3vnbOqx0pOiitDJ4hHn7XCRnvUx55FH9qnF8PiZ+LUZxByfT0fF0cj02Ep546xuV GQFT2SYjkfLffg2Ki91wA2tB5fttEh5K8ER9S7Rw= Received: from localhost (p54ad4af6.dip0.t-ipconnect.de [84.173.74.246]) by mx.zohomail.com with SMTPS id 1599737415744935.985415628755; Thu, 10 Sep 2020 04:30:15 -0700 (PDT) References: <20200909150314.13619.80121@vcs0.savannah.gnu.org> <874ko76ins.fsf@elephly.net> User-agent: mu4e 1.4.13; emacs 27.1 From: Ricardo Wurmus To: Roel Janssen Subject: Re: branch master updated: gnu: Add r-bisquerna. In-reply-to: X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Date: Thu, 10 Sep 2020 13:31:29 +0200 Message-ID: <87blid6f72.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External Received-SPF: pass client-ip=136.143.188.51; envelope-from=rekado@elephly.net; helo=sender4-of-o51.zoho.com X-detected-operating-system: by eggs.gnu.org: First seen = 2020/09/10 06:37:33 X-ACL-Warn: Detected OS = Linux 3.11 and newer [fuzzy] X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_NONE=-0.0001, RCVD_IN_MSPIKE_H2=-0.001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: guix-devel@gnu.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: guix-devel@gnu.org, guix-commits@gnu.org Errors-To: guix-devel-bounces+larch=yhetil.org@gnu.org Sender: "Guix-devel" X-Scanner: scn0 Authentication-Results: aspmx1.migadu.com; dkim=fail (rsa verify failed) header.d=elephly.net header.s=zoho header.b=QlhQsh8K; dmarc=none; spf=pass (aspmx1.migadu.com: domain of guix-devel-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-devel-bounces@gnu.org X-Spam-Score: 1.99 X-TUID: vn+xhlm3TL5H Roel Janssen writes: >> > +(define-public r-bisquerna >> > + (package >> > + (name "r-bisquerna") >> > + (version "1.0.4") >> > + (source (origin >> > + (method url-fetch) >> > + (uri (cran-uri "BisqueRNA" version)) >> > + (sha256 >> > + (base32 >> > + "01g34n87ml7n3pck77497ddgbv3rr5p4153ac8ninpgjijlm3jw >> > 2")))) >>=20 >> Why is this in (gnu packages bioinformatics) and not in (gnu packages >> cran)? > > It seemed so "bioinformatics"-specific. But you're right, it's a CRAN > package, so that may be a better fit. Shall I move it to CRAN? If you have time to do that, yes please. Some time ago I started a half-hearted migration of R packages from (gnu packages bioinformatics) to (gnu packages cran) and (gnu packages bioconductor). It=E2=80=99s not supremely important, but I think in the long term we=E2=80=99d like to have= CRAN things in (gnu packages cran) and Bioconductor things in (gnu packages bioconductor), because it=E2=80=99s deliciously unsurprising. :) >> > + (synopsis "Decomposition of Bulk Expression with Single-Cell >> > Sequencing") >>=20 >> Please use lowercase where it would be normally used. > > My mistake. I will take better care of this in the future. Thank you! Perhaps we could sprinkle some smarts over the CRAN importer to do this automatically, but with R packages we often have names of methods that should be upper case (like =E2=80=9CBayes*=E2=80=9D or =E2=80=9CSNPs=E2=80= =9D), so I have shied away from developing heuristics for that. Thanks for adding more R packages! --=20 Ricardo