unofficial mirror of guix-devel@gnu.org 
 help / color / mirror / Atom feed
From: Ricardo Wurmus <rekado@elephly.net>
To: Roel Janssen <roel@gnu.org>
Cc: guix-devel@gnu.org, guix-commits@gnu.org
Subject: Re: branch master updated: gnu: Add r-bisquerna.
Date: Thu, 10 Sep 2020 13:31:29 +0200
Message-ID: <87blid6f72.fsf@elephly.net> (raw)
In-Reply-To: <aa77dbf012f7de1d919bd9f97a3f069bf62dfd97.camel@gnu.org>


Roel Janssen <roel@gnu.org> writes:

>> > +(define-public r-bisquerna
>> > +  (package
>> > +   (name "r-bisquerna")
>> > +   (version "1.0.4")
>> > +   (source (origin
>> > +            (method url-fetch)
>> > +            (uri (cran-uri "BisqueRNA" version))
>> > +            (sha256
>> > +             (base32
>> > +              "01g34n87ml7n3pck77497ddgbv3rr5p4153ac8ninpgjijlm3jw
>> > 2"))))
>> 
>> Why is this in (gnu packages bioinformatics) and not in (gnu packages
>> cran)?
>
> It seemed so "bioinformatics"-specific.  But you're right, it's a CRAN
> package, so that may be a better fit.  Shall I move it to CRAN?

If you have time to do that, yes please.  Some time ago I started a
half-hearted migration of R packages from (gnu packages bioinformatics)
to (gnu packages cran) and (gnu packages bioconductor).  It’s not
supremely important, but I think in the long term we’d like to have CRAN
things in (gnu packages cran) and Bioconductor things in (gnu packages
bioconductor), because it’s deliciously unsurprising. :)

>> > +   (synopsis "Decomposition of Bulk Expression with Single-Cell
>> > Sequencing")
>> 
>> Please use lowercase where it would be normally used.
>
> My mistake. I will take better care of this in the future.

Thank you!

Perhaps we could sprinkle some smarts over the CRAN importer to do this
automatically, but with R packages we often have names of methods that
should be upper case (like “Bayes*” or “SNPs”), so I have shied away
from developing heuristics for that.

Thanks for adding more R packages!

-- 
Ricardo


  reply	other threads:[~2020-09-10 11:30 UTC|newest]

Thread overview: 7+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
     [not found] <20200909150314.13619.80121@vcs0.savannah.gnu.org>
2020-09-09 16:04 ` Ricardo Wurmus
2020-09-10 10:48   ` Roel Janssen
2020-09-10 11:31     ` Ricardo Wurmus [this message]
2020-09-10 11:49       ` zimoun
2020-09-10 12:33         ` Ricardo Wurmus
2020-09-10 14:43       ` Roel Janssen
2020-09-11 18:13         ` zimoun

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

  List information: https://guix.gnu.org/

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=87blid6f72.fsf@elephly.net \
    --to=rekado@elephly.net \
    --cc=guix-commits@gnu.org \
    --cc=guix-devel@gnu.org \
    --cc=roel@gnu.org \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link

unofficial mirror of guix-devel@gnu.org 

This inbox may be cloned and mirrored by anyone:

	git clone --mirror https://yhetil.org/guix-devel/0 guix-devel/git/0.git

	# If you have public-inbox 1.1+ installed, you may
	# initialize and index your mirror using the following commands:
	public-inbox-init -V2 guix-devel guix-devel/ https://yhetil.org/guix-devel \
		guix-devel@gnu.org
	public-inbox-index guix-devel

Example config snippet for mirrors.
Newsgroups are available over NNTP:
	nntp://news.yhetil.org/yhetil.gnu.guix.devel
	nntp://news.gmane.io/gmane.comp.gnu.guix.devel


AGPL code for this site: git clone https://public-inbox.org/public-inbox.git