From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp1 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id aDg8GfgfpV+wIgAA0tVLHw (envelope-from ) for ; Fri, 06 Nov 2020 10:05:44 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp1 with LMTPS id gCfuFPgfpV9ySwAAbx9fmQ (envelope-from ) for ; Fri, 06 Nov 2020 10:05:44 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id B3A739402C8 for ; Fri, 6 Nov 2020 10:05:43 +0000 (UTC) Received: from localhost ([::1]:60486 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kayco-0002YL-MN for larch@yhetil.org; Fri, 06 Nov 2020 05:05:42 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:44366) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kayce-0002XR-5S for guix-devel@gnu.org; Fri, 06 Nov 2020 05:05:33 -0500 Received: from fencepost.gnu.org ([2001:470:142:3::e]:50847) by eggs.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kaycd-0000ee-SV; Fri, 06 Nov 2020 05:05:31 -0500 Received: from [2a01:e0a:1d:7270:af76:b9b:ca24:c465] (port=57232 helo=ribbon) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_256_CBC_SHA1:256) (Exim 4.82) (envelope-from ) id 1kaycd-0008Pi-EA; Fri, 06 Nov 2020 05:05:31 -0500 From: =?utf-8?Q?Ludovic_Court=C3=A8s?= To: zimoun Subject: Re: =?utf-8?Q?=E2=80=9Cguix?= pack -RR =?utf-8?Q?r=E2=80=9C?= fails? References: <87v9eldm7p.fsf@gmail.com> X-URL: http://www.fdn.fr/~lcourtes/ X-Revolutionary-Date: 16 Brumaire an 229 de la =?utf-8?Q?R=C3=A9volution?= X-PGP-Key-ID: 0x090B11993D9AEBB5 X-PGP-Key: http://www.fdn.fr/~lcourtes/ludovic.asc X-PGP-Fingerprint: 3CE4 6455 8A84 FDC6 9DB4 0CFB 090B 1199 3D9A EBB5 X-OS: x86_64-pc-linux-gnu Date: Fri, 06 Nov 2020 11:05:30 +0100 In-Reply-To: <87v9eldm7p.fsf@gmail.com> (zimoun's message of "Wed, 04 Nov 2020 19:13:30 +0100") Message-ID: <87a6vu242d.fsf@gnu.org> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/27.1 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-BeenThere: guix-devel@gnu.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: guix-devel@gnu.org Errors-To: guix-devel-bounces+larch=yhetil.org@gnu.org Sender: "Guix-devel" X-Scanner: ns3122888.ip-94-23-21.eu Authentication-Results: aspmx1.migadu.com; dkim=none; dmarc=pass (policy=none) header.from=gnu.org; spf=pass (aspmx1.migadu.com: domain of guix-devel-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-devel-bounces@gnu.org X-Spam-Score: -0.51 X-TUID: vRh8w07IFa32 Hi, zimoun skribis: > The usual =E2=80=98./bin/R=E2=80=99 fails with: > > $ ./bin/R > : unsupported Guix execution engine; ignoring =E2=80=98GUIX_EXECUTION_ENGINE=E2=80=99 is set to the empty string. > ./bin/R > R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out" > > [...] > > *** caught segfault *** > address 0x7f44f4b11008, cause 'memory not mapped' [...] > Error: package or namespace load failed for 'grDevices' in dyn.load(file,= DLLpath =3D DLLpath, ...): > unable to load shared object '/gnu/store/nqqhaz59gdr5q6mb6mw9dd8jk133rna= 2-r-minimal-4.0.3/lib/R/library/grDevices/libs/grDevices.so': > /gnu/store/nqqhaz59gdr5q6mb6mw9dd8jk133rna2-r-minimal-4.0.3/lib/R/libra= ry/grDevices/libs/grDevices.so: cannot open shared object file: Bad address > Error: package or namespace load failed for 'graphics' in dyn.load(file, = DLLpath =3D DLLpath, ...): > unable to load shared object '/gnu/store/nqqhaz59gdr5q6mb6mw9dd8jk133rna= 2-r-minimal-4.0.3/lib/R/library/grDevices/libs/grDevices.so': > /gnu/store/nqqhaz59gdr5q6mb6mw9dd8jk133rna2-r-minimal-4.0.3/lib/R/libra= ry/grDevices/libs/grDevices.so: cannot open shared object file: Bad address > Error: package or namespace load failed for 'stats' in dyn.load(file, DLL= path =3D DLLpath, ...): > unable to load shared object '/gnu/store/nqqhaz59gdr5q6mb6mw9dd8jk133rna= 2-r-minimal-4.0.3/lib/R/library/grDevices/libs/grDevices.so': Can you try =E2=80=98strace -f -s 500 -o log ./bin/R=E2=80=99 and send the = tail of the =E2=80=98log=E2=80=99 file? > The cluster machine is an old kernel: > > HEAD$ uname -a > Linux HEAD 2.6.32-573.8.1.el6.x86_64 #1 SMP Tue Nov 10 18:01:38 UTC 2015 = x86_64 x86_64 x86_64 GNU/Linux Our libc is built with =E2=80=98--enable-kernel=3D3.2.0=E2=80=99 so it=E2= =80=99s not clear whether this can work at all (this =E2=80=982.6=E2=80=99 kernel certainly contains = stuff backported from 3.x though, who knows.) HTH, Ludo=E2=80=99.