From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp0 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id wEQqEh5+61/wBgAA0tVLHw (envelope-from ) for ; Tue, 29 Dec 2020 19:06:06 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp0 with LMTPS id EIgEDh5+619uVgAA1q6Kng (envelope-from ) for ; Tue, 29 Dec 2020 19:06:06 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id CC3649404D2 for ; Tue, 29 Dec 2020 19:06:04 +0000 (UTC) Received: from localhost ([::1]:45732 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kuKJn-000069-Lm for larch@yhetil.org; Tue, 29 Dec 2020 14:06:03 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:40788) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kuKIn-00005n-8y for guix-devel@gnu.org; Tue, 29 Dec 2020 14:05:02 -0500 Received: from sender4-of-o57.zoho.com ([136.143.188.57]:21776) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kuKIf-0000Is-D1; Tue, 29 Dec 2020 14:05:00 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1609268689; cv=none; d=zohomail.com; s=zohoarc; b=RJf5XMOA7Vvu2n3e8ON8ZWYW8oYWpAU2eGE1RB0NY7peDthwd5lMSJzgg0rVO845L83wXvJF0EaZUaiczDu1QzjjJJHI8Li4cvGZNgYCLXr5Dj39fXIgwFglrpMs/Yum2gQBTYCQzpDHBQ3drb0I7jQtvrb5sWzyGkb3g9j+OWo= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1609268689; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=UBu9LRz4CWKrKo+dHHBOS/J8zkbL3hcMmq9w/TWgKpg=; b=ZzewV1/B+DS/GSUnadDex9IRxYb0eTYTqdHMpolsulZmX792Ec67ioEg5G/BTPn1djIEasXk/8avk6h3C8VcCvyUHCuiM+cnAYtVRASvwcWNhPkD8M9PiSR7ES7/XDf0/u944Njc0SmdDPXgjlGUW6vhKdig6FVZvM7R/gZEX/o= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1609268689; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:To:Cc:Subject:In-reply-to:Date:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding; bh=UBu9LRz4CWKrKo+dHHBOS/J8zkbL3hcMmq9w/TWgKpg=; b=H2cCJ3kZxWUtoUVpUMUuI56l3twI0jT6OS72DjMjipYLkQyMcojYKjnXrUNpiGXN RvaT4m+zNWavMQIzqotbcm7KGuWk0XXw6Z1n8uE3uVQ3VQIQGyZnh6zrVNuCCf16kS+ cpOQWURv54XqhD2hy3tPllC1RUN/uc+yzjuyYr+o= Received: from localhost (p54ad4f8d.dip0.t-ipconnect.de [84.173.79.141]) by mx.zohomail.com with SMTPS id 1609268685178920.7574168481993; Tue, 29 Dec 2020 11:04:45 -0800 (PST) References: <20201229164122.31455.12991@vcs0.savannah.gnu.org> <20201229164128.39AAE21074@vcs0.savannah.gnu.org> <87lfdg4h5i.fsf@gnu.org> User-agent: mu4e 1.4.13; emacs 27.1 From: Ricardo Wurmus To: Mathieu Othacehe Subject: Re: 08/10: gnu: r-snpstats: Move to (gnu packages bioconductor). In-reply-to: <87lfdg4h5i.fsf@gnu.org> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Date: Tue, 29 Dec 2020 20:04:41 +0100 Message-ID: <87a6twl9h2.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External Received-SPF: pass client-ip=136.143.188.57; envelope-from=rekado@elephly.net; helo=sender4-of-o57.zoho.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_NONE=-0.0001, RCVD_IN_MSPIKE_H4=0.001, RCVD_IN_MSPIKE_WL=0.001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: guix-devel@gnu.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: guix-devel@gnu.org Errors-To: guix-devel-bounces+larch=yhetil.org@gnu.org Sender: "Guix-devel" X-Migadu-Flow: FLOW_IN X-Migadu-Spam-Score: 0.67 Authentication-Results: aspmx1.migadu.com; dkim=fail (headers rsa verify failed) header.d=elephly.net header.s=zoho header.b=H2cCJ3kZ; arc=reject (signature check failed: fail, {[1] = sig:zohomail.com:reject}); dmarc=none; spf=pass (aspmx1.migadu.com: domain of guix-devel-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-devel-bounces@gnu.org X-Migadu-Queue-Id: CC3649404D2 X-Spam-Score: 0.67 X-Migadu-Scanner: scn0.migadu.com X-TUID: HHSnnQJrfPFz Mathieu Othacehe writes: > Hello, > > This commit caused the following evaluation issue: > > --8<---------------cut here---------------start------------->8--- > Generating package cache for '/gnu/store/dylz1h2sxgaqd6jhzq01b6y26797zjm5= -profile'... > (exception unbound-variable (value #f) (value "Unbound variable: ~S") (va= lue (r-snpstats)) (value #f)) > builder for `/gnu/store/g546w6qi19001rcx7si7imrb1z7yzf3g-guix-package-cac= he.drv' failed to produce output path `/gnu/store/sjy574qw76kdrria4grhx16xq= qs9w78z-guix-package-cache' > @ build-failed /gnu/store/g546w6qi19001rcx7si7imrb1z7yzf3g-guix-package-c= ache.drv - 1 builder for `/gnu/store/g546w6qi19001rcx7si7imrb1z7yzf3g-guix-= package-cache.drv' failed to produce output path `/gnu/store/sjy574qw76kdrr= ia4grhx16xqqs9w78z-guix- > --8<---------------cut here---------------end--------------->8--- > > I fixed it with 0c8bb20b7cbd39537999fce29979a6acaf64e601, which is maybe > not the better solution. Oh, that=E2=80=99s unfortunate. I=E2=80=99m sorry for the breakage. I did= run =E2=80=9Cmake=E2=80=9D to build the changed modules, so I=E2=80=99m surprised I didn=E2=80=99t see= an =E2=80=9CUnbound variable=E2=80=9D error then. I=E2=80=99ll move that package from cran.scm to bioconductor.scm as we did = in similar cases. --=20 Ricardo