From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ricardo Wurmus Subject: Re: [PATCH] gnu: Update STAR to 2.5.0c. Date: Sat, 23 Jan 2016 08:39:13 +0100 Message-ID: <878u3gvj6m.fsf@mdc-berlin.de> References: <87io2l4k0l.fsf@gnu.org> Mime-Version: 1.0 Content-Type: text/plain; charset="utf-8" Content-Transfer-Encoding: quoted-printable Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:38851) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1aMsn9-0005yV-IH for guix-devel@gnu.org; Sat, 23 Jan 2016 02:39:28 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1aMsn6-0000Vz-Bc for guix-devel@gnu.org; Sat, 23 Jan 2016 02:39:27 -0500 In-Reply-To: <87io2l4k0l.fsf@gnu.org> List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org To: Ludovic =?utf-8?Q?Court=C3=A8s?= Cc: guix-devel Ludovic Court=C3=A8s writes: > Ricardo Wurmus skribis: > >> From e7090b086c71fb8f8a56b6c7cb078b94bc577d2c Mon Sep 17 00:00:00 2001 >> From: Ricardo Wurmus >> Date: Tue, 19 Jan 2016 16:04:01 +0100 >> Subject: [PATCH 1/2] gnu: star: Use "modify-phases" syntax. >> >> * gnu/packages/bioinformatics.scm (star)[arguments]: Use "modify-phase= s" >> syntax. > > [...] > >> From 4efd7a8afe3fbc03f59c1061e9ab2cfcb7c88160 Mon Sep 17 00:00:00 2001 >> From: Ricardo Wurmus >> Date: Tue, 19 Jan 2016 16:26:47 +0100 >> Subject: [PATCH 2/2] gnu: star: Update to 2.5.0c. >> >> * gnu/packages/bioinformatics.scm (star): Update to 2.5.0c. >> [source]: Remove bundled htslib sources and pre-built binaries. >> [arguments]: Add phase "do-not-use-bundled-htslib". >> [inputs]: Add "htslib". > > Both LGTM! Thanks. I updated to 2.5.1b and changed the commit messages accordingly. Will push the two commits in a moment. ~~ Ricardo