Mark H Weaver <mhw@netris.org> writes:

> kkebreau@posteo.net (Kei Kebreau) writes:
>
>> kkebreau pushed a commit to branch master
>> in repository guix.
>>
>> commit d10092b849153dc27cfed0a9601fde6c7bdec918
>> Author: Kei Kebreau <kkebreau@posteo.net>
>> Date:   Sun Jul 30 21:02:35 2017 -0400
>>
>>     gnu: Put autoconf-related phases immediately after the 'unpack phase.
>>     
>>     * gnu/packages/audio.scm (audacity, rtmidi)[arguments]: Correct phases
>>     accordingly.
>>     * gnu/packages/bioinformatics.scm (mash, seek, vsearch, emboss,
>>     htslib-for-sambamba)[arguments]: Likewise.
>>     * gnu/packages/ci.scm (cuirass)[arguments]: Likewise.
>>     * gnu/packages/compression.scm (minizip, xdelta)[arguments]: Likewise.
>>     * gnu/packages/cpp.scm (libzen)[arguments]: Likewise.
>>     * gnu/packages/crypto.scm (opendht)[arguments]: Likewise.
>>     * gnu/packages/databases.scm (4store, mdbtools)[arguments]: Likewise.
>>     * gnu/packages/debug.scm (stress-make)[arguments]: Likewise.
>>     * gnu/packages/dns.scm (dnscrypt-proxy, dnscrypt-wrapper)[arguments]:
>>     Likewise.
>>     * gnu/packages/emacs.scm (emacs-pdf-tools)[arguments]: Likewise.
>>     * gnu/packages/embedded.scm (libjaylink, openocd)[arguments]: Likewise.
>>     * gnu/packages/engineering.scm (gerbv)[arguments]: Likewise.
>>     * gnu/packages/erlang.scm (erlang)[arguments]: Likewise.
>>     * gnu/packages/ftp.scm (weex)[arguments]: Likewise.
>>     * gnu/packages/gnome.scm (dia)[arguments]: Likewise.
>>     * gnu/packages/gnunet.scm (gnurl, guile-gnunet)[arguments]: Likewise.
>>     * gnu/packages/gtk.scm (guile-rsvg, graphene)[arguments]: Likewise.
>>     * gnu/packages/guile.scm (guildhall, guile-ics, guile-sqlite3)[arguments]:
>>     Likewise.
>>     * gnu/packages/ibus.scm (ibus-libpinyin)[arguments]: Likewise.
>>     * gnu/packages/irc.scm (weechat)[arguments]: Likewise.
>>     * gnu/packages/java.scm (classpath-devel)[arguments]: Likewise.
>>     * gnu/packages/libreoffice.scm (libetonyek)[arguments]: Likewise.
>>     * gnu/packages/libusb.scm (hidapi)[arguments]: Likewise.
>>     * gnu/packages/linux.scm (gpm)[arguments]: Likewise.
>>     * gnu/packages/logging.scm (glog)[arguments]: Likewise.
>>     * gnu/packages/machine-learning.scm (ghmm)[arguments]: Likewise.
>>     * gnu/packages/mail.scm (dovecot-trees, dovecot-libsodium-plugin, esmtp)
>>     [arguments]: Likewise.
>>     * gnu/packages/messaging.scm (freetalk, libmesode, libstrophe)[arguments]:
>>     Likewise.
>>     * gnu/packages/microcom.scm (microcom)[arguments]: Likewise.
>>     * gnu/packages/ocaml.scm (ocaml-ssl)[arguments]: Likewise.
>>     * gnu/packages/parallel.scm (slurm)[arguments]: Likewise.
>>     * gnu/packages/pdf.scm (libharu)[arguments]: Likewise.
>>     * gnu/packages/samba.scm (cifs-utils)[arguments]: Likewise.
>>     * gnu/packages/serialization.scm (msgpack)[arguments]: Likewise.
>>     * gnu/packages/shells.scm (scsh)[arguments]: Likewise.
>>     * gnu/packages/telephony.scm (libiax2)[arguments]: Likewise.
>>     * gnu/packages/textutils.scm (dotconf)[arguments]: Likewise.
>>     * gnu/packages/version-control.scm (findnewest)[arguments]: Likewise.
>>     * gnu/packages/video.scm (libmediainfo, mediainfo)[arguments]: Likewise.
>
> Thanks for working on this, but it looks like you didn't actually test
> building the modified packages.  For example:
>
>> diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm
>> index fe43d01..028fe06 100644
>> --- a/gnu/packages/java.scm
>> +++ b/gnu/packages/java.scm
>> @@ -685,7 +685,7 @@ the standard javac executable.  The tool runs on JamVM instead of SableVM.")))
>>                 "--disable-gjdoc")
>>           #:phases
>>           (modify-phases %standard-phases
>> -           (add-before 'configure 'bootstrap
>> +           (add-after 'remove-unsupported-anootations 'bootstrap
>>               (lambda _
>>                 (zero? (system* "autoreconf" "-vif"))))
>>             (add-after 'unpack 'remove-unsupported-annotations
>
> You mispelled 'annotations' in the name of the phase, and thus we lost
> our Java packages.
>
> Since this commit, there are now 119 newly failing jobs:
>
>   https://hydra.gnu.org/eval/109773#tabs-now-fail
>
> I'm not sure how many of these new failures are due to this commit, but
> I suspect many of them are.
>
> Please test before you push to master.
>
>       Mark

This was caused by confusion on my end. I am working right now to find
and fix these errors. Thank you for your notification. My apologies.