From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp1 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id /d+0DcL8WF92GwAA0tVLHw (envelope-from ) for ; Wed, 09 Sep 2020 16:03:14 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp1 with LMTPS id QGc7CcL8WF+mTgAAbx9fmQ (envelope-from ) for ; Wed, 09 Sep 2020 16:03:14 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id A9348940919 for ; Wed, 9 Sep 2020 16:03:13 +0000 (UTC) Received: from localhost ([::1]:36632 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kG2Yy-0004Lx-Ej for larch@yhetil.org; Wed, 09 Sep 2020 12:03:12 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:49916) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kG2XH-0001oZ-UM; Wed, 09 Sep 2020 12:01:28 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21183) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kG2XE-0003KK-Vy; Wed, 09 Sep 2020 12:01:27 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1599667281; cv=none; d=zohomail.com; s=zohoarc; b=JPMH1z7r/Hs26Evm7Af/sZbUif7JogwHgxiAyueoQfNejYzMARTjE8IT03x6ufZjAziwIUnyW+TkuRThlriQXUHmed2h1LGEdllw03dnLN922RUVxomm3Qp28TQGEHOdWK6n7jJKj/FZ/ziYV9BjpuGqjXiv12TzBZQtw7DOf4A= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1599667281; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=YA7oRXmZTDQqjTEwxW6Ra6W2F9PX0wSRNJZ08DXyNeE=; b=aGIKao9ufeLNinRS5iauHpxkb3ukDr81M42LlqOOTu+yaBeTr2jdAvgD2rqugz3bxvvPrmPKNZBv+0UvPr6iUj+EylUVU+qv+jJlYhQwf/jRLnFJ4D195USYyuGUe3CmvHfEO+ti53P0KBJqmWYTaRN+ttj82uxvwnZ7u5m9UAQ= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1599667281; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:To:Cc:Subject:In-reply-to:Date:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding; bh=YA7oRXmZTDQqjTEwxW6Ra6W2F9PX0wSRNJZ08DXyNeE=; b=XpBac64wLi7U5UJh30HZ9Izc3MPYb3MZXLahBqx2VOqBiWAHxCmft822YI/T67Pp xejOPJHriEgjmENQCKo8wMTCPcqjicO5JnQcqaqp/OMfXxppIEJGtrX6Ptz9ty7Htvg Xw33Dj+mMlkb3Cm7IXlZqe9jbDYF8b3m6dp8je84= Received: from localhost (p54ad4cd7.dip0.t-ipconnect.de [84.173.76.215]) by mx.zohomail.com with SMTPS id 1599667278135562.0728831562783; Wed, 9 Sep 2020 09:01:18 -0700 (PDT) References: <20200909145626.7782.91114@vcs0.savannah.gnu.org> User-agent: mu4e 1.4.13; emacs 27.1 From: Ricardo Wurmus To: Roel Janssen Subject: Re: branch master updated: gnu: Add r-loomr. In-reply-to: <20200909145626.7782.91114@vcs0.savannah.gnu.org> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Date: Wed, 09 Sep 2020 18:02:30 +0200 Message-ID: <877dt36iqx.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External Received-SPF: pass client-ip=136.143.188.51; envelope-from=rekado@elephly.net; helo=sender4-of-o51.zoho.com X-detected-operating-system: by eggs.gnu.org: First seen = 2020/09/09 12:01:22 X-ACL-Warn: Detected OS = Linux 3.11 and newer [fuzzy] X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_NONE=-0.0001, RCVD_IN_MSPIKE_H2=-0.001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: guix-devel@gnu.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: guix-devel@gnu.org, guix-commits@gnu.org Errors-To: guix-devel-bounces+larch=yhetil.org@gnu.org Sender: "Guix-devel" X-Scanner: scn0 Authentication-Results: aspmx1.migadu.com; dkim=fail (rsa verify failed) header.d=elephly.net header.s=zoho header.b=XpBac64w; dmarc=none; spf=pass (aspmx1.migadu.com: domain of guix-devel-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-devel-bounces@gnu.org X-Spam-Score: 1.99 X-TUID: MQHEPBdTjPsD Hi Roel, > This is an automated email from the git hooks/post-receive script. > > roelj pushed a commit to branch master > in repository guix. > > The following commit(s) were added to refs/heads/master by this push: > new 1f56ec0 gnu: Add r-loomr. > 1f56ec0 is described below > > commit 1f56ec08af704bdc7aa3e143bf5ce351c5306dea > Author: Roel Janssen > AuthorDate: Wed Sep 9 16:56:02 2020 +0200 > > gnu: Add r-loomr. >=20=20=20=20=20 > * gnu/packages/bioinformatics.scm (r-loomr): New variable. This is not free software. See https://github.com/mojaveazure/loomR/pull/24 Aside from this, I would like to say two things: > gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++ Let=E2=80=99s please not add R packages to (gnu packages bioinformatics) wh= en it can be avoided. (In this case there=E2=80=99s no CRAN package, so it=E2=80= =99s fine.) > +(define-public r-loomr > + (package > + (name "r-loomr") > + (version "0.2.0-beta") > + (source (origin > + (method url-fetch) > + (uri (string-append > + "https://github.com/mojaveazure/loomR/archive/" > + version ".tar.gz")) This is not okay as these generated tarballs are not stable. I haven=E2=80= =99t seen these patches on guix-patches before =E2=80=94 maybe I missed them. B= ut we have been avoiding these kind of URLs since a long time and had I seen the patches on guix-patches I and other would probably have pointed this out. Can you please revert this ASAP? --=20 Ricardo