From: zimoun <zimon.toutoune@gmail.com>
To: Roel Janssen <roel@gnu.org>, guix-devel@gnu.org
Subject: Re: Updating to latest Bioconductor release
Date: Mon, 16 Nov 2020 13:59:25 +0100 [thread overview]
Message-ID: <86eektsbiq.fsf@gmail.com> (raw)
In-Reply-To: <5b6c661babc4fbda5cda5c72a654e79b14b0bf67.camel@gnu.org>
Hi again, :-)
On Mon, 16 Nov 2020 at 13:38, Roel Janssen <roel@gnu.org> wrote:
> Well, I see we're getting R packages that fail to build because the
> source cannot be downloaded (anymore), due to the outdated
> Bioconductor version
Do you mean related to #39885?
<http://issues.guix.gnu.org/issue/39885>
> version. So if we can do an upgrade to 3.12 soon, and add the
> 'workflow' type later, that'd be my preferred route.
>
> So to achieve that, I think we need to:
> 1. Update the Bioconductor version to 3.12
> 2. Update/build the Bioconductor packages that are already in Guix.
> 3. --> When all build failures have been resolved, push to master?
Ok.
> 4. Add the bits for 'workflow' packages.
> 5. Add workflow packages / adjust the ones we have (do we have any?)
> and build/test them.
I do not think we have any. But I have not checked everything neither. :-)
<https://bioconductor.org/packages/3.11/workflows/>
All the best,
simon
next prev parent reply other threads:[~2020-11-16 13:02 UTC|newest]
Thread overview: 31+ messages / expand[flat|nested] mbox.gz Atom feed top
2020-11-16 10:49 Updating to latest Bioconductor release Roel Janssen
2020-11-16 11:27 ` zimoun
2020-11-16 12:10 ` Roel Janssen
2020-11-16 12:29 ` zimoun
2020-11-16 12:38 ` Roel Janssen
2020-11-16 12:59 ` zimoun [this message]
2020-11-17 22:58 ` zimoun
2020-11-18 9:31 ` Roel Janssen
2020-11-18 11:50 ` zimoun
2020-11-18 16:13 ` Roel Janssen
2020-11-18 16:23 ` zimoun
2020-11-18 16:33 ` Roel Janssen
2020-11-18 16:59 ` zimoun
2020-11-19 15:31 ` Roel Janssen
2020-11-19 15:36 ` zimoun
2020-11-19 15:57 ` Roel Janssen
2020-11-19 16:18 ` zimoun
2020-11-19 16:25 ` Roel Janssen
2020-11-19 16:36 ` zimoun
2020-11-19 17:27 ` zimoun
2020-11-19 19:03 ` Roel Janssen
2020-11-19 19:18 ` zimoun
2020-11-19 21:13 ` Ricardo Wurmus
2020-11-20 9:16 ` Roel Janssen
2020-11-20 13:39 ` Ricardo Wurmus
2020-11-20 13:42 ` Ricardo Wurmus
2020-11-20 14:02 ` zimoun
2020-11-20 14:10 ` Roel Janssen
2020-11-20 13:59 ` zimoun
2020-11-20 14:28 ` Ricardo Wurmus
2020-11-20 15:20 ` zimoun
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
List information: https://guix.gnu.org/
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=86eektsbiq.fsf@gmail.com \
--to=zimon.toutoune@gmail.com \
--cc=guix-devel@gnu.org \
--cc=roel@gnu.org \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
Code repositories for project(s) associated with this public inbox
https://git.savannah.gnu.org/cgit/guix.git
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).