From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp0 ([2001:41d0:2:bcc0::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms0.migadu.com with LMTPS id q5TfGHKbr2BshQEAgWs5BA (envelope-from ) for ; Thu, 27 May 2021 15:15:30 +0200 Received: from aspmx1.migadu.com ([2001:41d0:2:bcc0::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp0 with LMTPS id QBrxE3Kbr2DqYQAA1q6Kng (envelope-from ) for ; Thu, 27 May 2021 13:15:30 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id A5E4523CED for ; Thu, 27 May 2021 15:15:29 +0200 (CEST) Received: from localhost ([::1]:59018 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lmFrE-00053Y-CV for larch@yhetil.org; Thu, 27 May 2021 09:15:28 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:39318) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lmFef-0006Fa-0f for guix-devel@gnu.org; Thu, 27 May 2021 09:02:29 -0400 Received: from mail-wr1-x435.google.com ([2a00:1450:4864:20::435]:46697) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lmFec-0003H5-KH for guix-devel@gnu.org; Thu, 27 May 2021 09:02:28 -0400 Received: by mail-wr1-x435.google.com with SMTP id g17so4439871wrs.13 for ; Thu, 27 May 2021 06:02:25 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:in-reply-to:references:date:message-id :mime-version; bh=LwWC2TSMTz9YYtgUeEOF2vzRNvtB1ftJ7kgwJJcvS+U=; b=Qk5pMcmU0ZOupMfY6j6lbMHwXoz/GvSxLapZA0QCqO/1OP9m6jZjAvvvA/AoTE9znt 66GiZTIkCk+wbyTnkk0jhfc7M+A/ka9b/BL2sdIOSVqX6GvAGNBjVuquXjBy5vhgpnPd foL9YOg6YBpQ/zVhxAghcE35nW0eVMqJmIjel/PLQDjBOioa5yhgw1AZTBU229BQj7Gk bv2lspdut8E8p3xLlQHx53jqpMywpUJEh3UDqR9/9dsVw15CMc7q0QGiJOYUnZTGG1Nh yaF6WNo3J6D8jj8eOWi262i3Yc2oVlhsUUEFZ0strt2vkuDMix9F3clUCqzqGx/sX0uQ Fj4Q== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:in-reply-to:references:date :message-id:mime-version; bh=LwWC2TSMTz9YYtgUeEOF2vzRNvtB1ftJ7kgwJJcvS+U=; b=L/If332GQN9rtgJUCFgRaaJA/Ca1reKDaV+aA9Ydmr6DSA9KvBH8lfofS1ugmQrHq0 PULTp0qXHHYHMl/0M5y5TqFJsuuY1ISNksUiEiLjYA17VrrBV34NUqgbfTXgwM9KUbG/ A62cuhQkDo7Pyz1z0BgEIBAtl3hVJcIWZX/RfYkcfJIvL7uotBXDv90BxpE9IatqXd5O LHwyrw3356gMhVlRhSVn2S0yJwBFPwDi6kX8Afto4i3ivNCfEjVEriMLNQ2mGS9PJ6Ft S9S4AsLlXbEVIRx5QHuOd7vNVzOZItgyE3hTPR62dvLJGXknR4GRep+5b+lJvK6Q0pJj sf7g== X-Gm-Message-State: AOAM530qkgmP5zfbal5OtsXcyJWcNe/2k/LHYtKlZoCvGzTFdIbQ3Kxr 2g6vIgdaP9PVkh3/9ncxkRBcV3/nvu0= X-Google-Smtp-Source: ABdhPJwyei+Zyd9019DpjFLNzFn7k73zw0sLVZK9xvBy2Y+8kQfcWBVTg+7+EM10Ry3WHlvIidi6BA== X-Received: by 2002:adf:f5d1:: with SMTP id k17mr3391530wrp.106.1622120544282; Thu, 27 May 2021 06:02:24 -0700 (PDT) Received: from lili ([2a01:e0a:59b:9120:65d2:2476:f637:db1e]) by smtp.gmail.com with ESMTPSA id n13sm3460179wrg.75.2021.05.27.06.02.23 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Thu, 27 May 2021 06:02:23 -0700 (PDT) From: zimoun To: "Cook, Malcolm" Subject: RE: guix and mirroring dataset In-Reply-To: References: <86tumpnhvl.fsf@gmail.com> Date: Thu, 27 May 2021 14:57:08 +0200 Message-ID: <86eedsnxln.fsf@gmail.com> MIME-Version: 1.0 Content-Type: text/plain Received-SPF: pass client-ip=2a00:1450:4864:20::435; envelope-from=zimon.toutoune@gmail.com; helo=mail-wr1-x435.google.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: guix-devel@gnu.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: "guix-devel@gnu.org" Errors-To: guix-devel-bounces+larch=yhetil.org@gnu.org Sender: "Guix-devel" X-Migadu-Flow: FLOW_IN ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1622121330; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-type:content-type:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post:dkim-signature; bh=LwWC2TSMTz9YYtgUeEOF2vzRNvtB1ftJ7kgwJJcvS+U=; b=dZfb7M2+OtDpcA8VfkqN0XKmuWRbXq7p0XWiOKe6WfXPNGOQ9CMb72llPwUQzBmBjaw51b O4xjYkDVc/4+mLizuFAsQnKMAWdo0u01QrmpzoYKNmANz7f52wA8uSITzArXNb4uknQfMf Kn1Vn+jHkVVGztCaSamjc0MHFyye+NvCdkn9UHU2zkoeYtDchOeIRMqXhk/6NdUXCWmxtY sY0HwRp4uYt/GurdIii2GS3Z8PPtZ1E6wnW480/k0YSK6Ph8AJXAKKmX/QWYZIndXOQSJW 2FXBR1WzQBYayOpzcvRl1rXSHq5vgdc6KuO9luHCG1iDogyO8aJ48gMsdmjyOw== ARC-Seal: i=1; s=key1; d=yhetil.org; t=1622121330; a=rsa-sha256; cv=none; b=IH8wRCnw9YC3T3dro4wknpPblYh5Uc/APWtyaJQV6MzBQR+epaFfWuxx8Fe5hH1U6ud9P1 KndUxkKjc0hzquDR8mp55EomZU9pjF7v2CKo0bFhR1xsiS5REBfJ+xhZBZHP07SCUq2FLD x7aznD/RLIqXuAR6b1qDVYBltlVWNkbAtbYJjYPzsRbWoKeJOCygvBwsrcHfXQdyihABIf QAbHSF2itXaXqKiXWPYMDo0LMk5BlEnjodwDHq9F5CVu1Y+/ZnaWzlQBU6ONSiZzI5f3Zu H3f/42XXB5x3FvDW7vBRTA/7zkrILb49ddKrlHmXZ6inKdpUSum9EnkwylwMHw== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=pass header.d=gmail.com header.s=20161025 header.b=Qk5pMcmU; dmarc=pass (policy=none) header.from=gmail.com; spf=pass (aspmx1.migadu.com: domain of guix-devel-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-devel-bounces@gnu.org X-Migadu-Spam-Score: -3.13 Authentication-Results: aspmx1.migadu.com; dkim=pass header.d=gmail.com header.s=20161025 header.b=Qk5pMcmU; dmarc=pass (policy=none) header.from=gmail.com; spf=pass (aspmx1.migadu.com: domain of guix-devel-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-devel-bounces@gnu.org X-Migadu-Queue-Id: A5E4523CED X-Spam-Score: -3.13 X-Migadu-Scanner: scn1.migadu.com X-TUID: bydRHw5MlYU7 Hi, On Thu, 27 May 2021 at 04:37, "Cook, Malcolm" wrote: >>Your input is welcome. :-) > > I was expecting to find workflows that have been developed for > mirroring (downloading) genomic resources from sites such as > Ensembl/NCBI/UCSC, etc, and then creating on-prem derived resources > (e.g. blast indexes). Sorry, I missed that what you were asking. :-) The answer is: nothing ready-to-use. Well, feel free to start a discussion on gwl-devel@gnu.org. > I currently tend to do this with Gnu Make and shell scripting. If you already have some shell scripts, I think the effort is not too high to wrap around some GWL glue. ;-) And maybe it could be worth to see if a common organisation makes sense here for the various cases. Cheers, simon