From: zimoun <zimon.toutoune@gmail.com>
To: "Cook, Malcolm" <MEC@stowers.org>
Cc: "guix-devel@gnu.org" <guix-devel@gnu.org>
Subject: RE: guix and mirroring dataset
Date: Thu, 27 May 2021 14:57:08 +0200 [thread overview]
Message-ID: <86eedsnxln.fsf@gmail.com> (raw)
In-Reply-To: <DM6PR20MB3410A0152C52640D5C103E23BE239@DM6PR20MB3410.namprd20.prod.outlook.com>
Hi,
On Thu, 27 May 2021 at 04:37, "Cook, Malcolm" <MEC@stowers.org> wrote:
>>Your input is welcome. :-)
>
> I was expecting to find workflows that have been developed for
> mirroring (downloading) genomic resources from sites such as
> Ensembl/NCBI/UCSC, etc, and then creating on-prem derived resources
> (e.g. blast indexes).
Sorry, I missed that what you were asking. :-)
The answer is: nothing ready-to-use. Well, feel free to start a
discussion on gwl-devel@gnu.org.
> I currently tend to do this with Gnu Make and shell scripting.
If you already have some shell scripts, I think the effort is not too
high to wrap around some GWL glue. ;-)
And maybe it could be worth to see if a common organisation makes sense
here for the various cases.
Cheers,
simon
next prev parent reply other threads:[~2021-05-27 13:15 UTC|newest]
Thread overview: 4+ messages / expand[flat|nested] mbox.gz Atom feed top
2021-05-27 0:24 guix and mirroring dataset zimoun
2021-05-27 4:37 ` Cook, Malcolm
2021-05-27 12:57 ` zimoun [this message]
-- strict thread matches above, loose matches on Subject: below --
2021-05-17 19:04 Cook, Malcolm
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
List information: https://guix.gnu.org/
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=86eedsnxln.fsf@gmail.com \
--to=zimon.toutoune@gmail.com \
--cc=MEC@stowers.org \
--cc=guix-devel@gnu.org \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
Code repositories for project(s) associated with this public inbox
https://git.savannah.gnu.org/cgit/guix.git
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).