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From: zimoun <zimon.toutoune@gmail.com>
To: "Cook, Malcolm" <MEC@stowers.org>
Cc: "guix-devel@gnu.org" <guix-devel@gnu.org>
Subject: RE: guix and mirroring dataset
Date: Thu, 27 May 2021 14:57:08 +0200	[thread overview]
Message-ID: <86eedsnxln.fsf@gmail.com> (raw)
In-Reply-To: <DM6PR20MB3410A0152C52640D5C103E23BE239@DM6PR20MB3410.namprd20.prod.outlook.com>

Hi,

On Thu, 27 May 2021 at 04:37, "Cook, Malcolm" <MEC@stowers.org> wrote:

>>Your input is welcome. :-)
>
> I was expecting to find workflows that have been developed for
> mirroring (downloading) genomic resources from sites such as
> Ensembl/NCBI/UCSC, etc, and then creating on-prem derived resources
> (e.g. blast indexes).

Sorry, I missed that what you were asking. :-)

The answer is: nothing ready-to-use.  Well, feel free to start a
discussion on gwl-devel@gnu.org.

> I currently tend to do this with Gnu Make and shell scripting.

If you already have some shell scripts, I think the effort is not too
high to wrap around some GWL glue. ;-)

And maybe it could be worth to see if a common organisation makes sense
here for the various cases.


Cheers,
simon


  reply	other threads:[~2021-05-27 13:15 UTC|newest]

Thread overview: 4+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2021-05-27  0:24 guix and mirroring dataset zimoun
2021-05-27  4:37 ` Cook, Malcolm
2021-05-27 12:57   ` zimoun [this message]
  -- strict thread matches above, loose matches on Subject: below --
2021-05-17 19:04 Cook, Malcolm

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