From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp0 ([2001:41d0:2:bcc0::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms0.migadu.com with LMTPS id SCw4A/1XoWGnVgEAgWs5BA (envelope-from ) for ; Fri, 26 Nov 2021 22:56:13 +0100 Received: from aspmx1.migadu.com ([2001:41d0:2:bcc0::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp0 with LMTPS id gJ6IOvxXoWGaVAAA1q6Kng (envelope-from ) for ; Fri, 26 Nov 2021 21:56:12 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 1112929E41 for ; Fri, 26 Nov 2021 22:56:12 +0100 (CET) Received: from localhost ([::1]:37636 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1mqjCV-0004lY-6J for larch@yhetil.org; Fri, 26 Nov 2021 16:56:11 -0500 Received: from eggs.gnu.org ([209.51.188.92]:46966) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mqjCK-0004lP-VD for guix-devel@gnu.org; Fri, 26 Nov 2021 16:56:00 -0500 Received: from [2a00:1450:4864:20::32c] (port=44566 helo=mail-wm1-x32c.google.com) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1mqjCI-0001N5-OW for guix-devel@gnu.org; Fri, 26 Nov 2021 16:56:00 -0500 Received: by mail-wm1-x32c.google.com with SMTP id p27-20020a05600c1d9b00b0033bf8532855so7628874wms.3 for ; Fri, 26 Nov 2021 13:55:58 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=from:to:subject:date:message-id:mime-version :content-transfer-encoding; bh=Jzu2g3k4Tnm9dfTsObOXk0IYhi85HhhnytKf9oeZykk=; b=RiuA4BlNNIwJzpyFTwSW4OGIV2TG7rKQ1oIVfnOdYasMiPu3MmYywRmyUef3uuz+9n u3JgMpoM10IRQ+bFHR8Ph5Ypf6LCLAnIIiIJ03TDFd7GcOu3wYbCmK0w/sQo/Lnz99CH Kt6rhvyfMEbzNvkDJFTP8tFzoghJOum2encgojWIMjdzXYI6L3hhka5wUSPe2j9oc2EL gDb4rDpcJ48dLSWjDUJ5hXB30V7Io5dPEpJthyrzhqjtrLnt6DNycxzVCx8c2JG12+cT bbYtd+VmXbWnmnb+NmVHbD5+dApT5WuUfbJ7ICLw7cu5hByK6pF8cOm/r9oRqswf/UXn 9jfQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=x-gm-message-state:from:to:subject:date:message-id:mime-version :content-transfer-encoding; bh=Jzu2g3k4Tnm9dfTsObOXk0IYhi85HhhnytKf9oeZykk=; b=emy78+QJr8PLYvo4IaJvKNch7WGSwceL2BbWZj1Rt1cPA9OYyHREqCVCjmxZflv+SB rM7ZdaHJGwIvKcGHJAwTnwDr31KlEge1ALdgxopaWwD06rliJzxiKYWRU6Jgf/EgmQDA jtgoIhFmR6CMzCS/A1jMyTXB2T3o90Bb/NEc0VjN11bCRAwQoaB0f8bCtsF6Y8oWTKjz yHZzZd2nCIvdHZWZi17b/B12ZOA0kYIUcorMIdXWfrow3aNL5dB5usxR19YlkC5WeMKa Nn5PhL0iOtTbDU/3kw7eSZBSqw8pIbU2aSltnirDrvyGsdp8c0WwEO8yaCHQKOWBl4X1 3Q+A== X-Gm-Message-State: AOAM531tcpnKfTjaLXutSUEOlYC6GBLa9Y6trQyBPegjhGNKxBHuPz3r jY2uO5dmpEluZAcia1wWSUVmL6wWejc= X-Google-Smtp-Source: ABdhPJwWsC0+wuoYiyQZjkfmiMKH6T1t722cu5bn1oObUSei6vbzwuKLyvAwaCyAXun/GGEXf9iIig== X-Received: by 2002:a7b:c194:: with SMTP id y20mr19074235wmi.61.1637963757007; Fri, 26 Nov 2021 13:55:57 -0800 (PST) Received: from bioinfomeary01-Precision-7820-Tower ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id t17sm10845049wmq.15.2021.11.26.13.55.56 for (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Fri, 26 Nov 2021 13:55:56 -0800 (PST) From: zimoun To: guix-devel@gnu.org Subject: [core-updates-frozen] Attempt julia@1.6.4 (upgrade) Date: Fri, 26 Nov 2021 22:55:48 +0100 Message-ID: <858rxa1t0b.fsf@gmail.com> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Host-Lookup-Failed: Reverse DNS lookup failed for 2a00:1450:4864:20::32c (failed) Received-SPF: pass client-ip=2a00:1450:4864:20::32c; envelope-from=zimon.toutoune@gmail.com; helo=mail-wm1-x32c.google.com X-Spam_score_int: -12 X-Spam_score: -1.3 X-Spam_bar: - X-Spam_report: (-1.3 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, PDS_HP_HELO_NORDNS=0.001, RCVD_IN_DNSWL_NONE=-0.0001, RDNS_NONE=0.793, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=no autolearn_force=no X-Spam_action: no action X-BeenThere: guix-devel@gnu.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+larch=yhetil.org@gnu.org Sender: "Guix-devel" X-Migadu-Flow: FLOW_IN ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1637963772; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:mime-version:mime-version: content-type:content-type: content-transfer-encoding:content-transfer-encoding:list-id:list-help: list-unsubscribe:list-subscribe:list-post:dkim-signature; bh=Jzu2g3k4Tnm9dfTsObOXk0IYhi85HhhnytKf9oeZykk=; b=CDckzSuUaJzqwbsfUtTgBI4lhwWWlhJLjLcOxF9tVmn0fxkH9BKeQ8gwN4EZVp9bMFImNJ 0exjukWT2f/zKdhP/XRAcjbHT9/+Bu5rD+LKm7mGJpZO6r2lNQoFPQcRTImlxPIMPZQXLe A5sPNKzDO+ZDMR3tyj1+E3qJYX/IrJvEyCe67kJVBzCXeH+WuITsOxEmCL5aSg4kVXJuqR x7cUC8x4pgsJ/84BeaqeRH1hvU83/leKseF/k4m5j5lfYmUFmFcGmMtSDWNQHeAgl0xLDy KOfmCgZ/1T2sI9WKFigcba2k0Ezgb4Kol/xFy4c8w0swy1eXef8voM65CijTHw== ARC-Seal: i=1; s=key1; d=yhetil.org; t=1637963772; a=rsa-sha256; cv=none; b=gIVtRhB1wX/mAyoGinBezc76YHzEgK7OZZ19L3/PItTnhlbbRiQuZMoS8NvMJkuP/SSU5o jgsIMSMGhju30zt9MUlG24JJCBKbCID/JNrbuTMIV391RW0rf2z+LcHTHGzJKkAtXOjn7O mGW+awPHob/ufQpHqrsKqyJ9+5+vZk5IwzWqluYiTqlv7jAU+2hvCsbA/X93kYoEZ3ovRI LEuXcix0qSPQFoxTNG+vKqaS3+PZmnLZGb1ZANNIelY0Tk28L0y0JS5XJa1ERfIRFuqdg0 bVFswANEQ0M9BuhfBJs4fbaAFYUofbqNyimfUPfQ2j0ryHs8/yqKiw0l+bR6jQ== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=pass header.d=gmail.com header.s=20210112 header.b=RiuA4BlN; dmarc=pass (policy=none) header.from=gmail.com; spf=pass (aspmx1.migadu.com: domain of guix-devel-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-devel-bounces@gnu.org X-Migadu-Spam-Score: -4.10 Authentication-Results: aspmx1.migadu.com; dkim=pass header.d=gmail.com header.s=20210112 header.b=RiuA4BlN; dmarc=pass (policy=none) header.from=gmail.com; spf=pass (aspmx1.migadu.com: domain of guix-devel-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-devel-bounces@gnu.org X-Migadu-Queue-Id: 1112929E41 X-Spam-Score: -4.10 X-Migadu-Scanner: scn1.migadu.com X-TUID: 5BGQ6c4Ko3e/ Hi, First, I am not convinced that upgrade Julia from 1.6.3 to 1.6.4 is something to do now; especially when the branch is =E2=80=9Cfrozen=E2=80=9D= . Using patches #52117 [1], all failures are fixed for 1.6.3. 1: https://issues.guix.gnu.org/52117 Here a rough attempt which replaces the source of 1.6.3 by 1.6.4 and many tests are deeply broken (broken precompile is not a good sign, at all ;-)). Well, it seems expected regarding the complexity of the Julia stack. :-) Therefore, the upgrade requires various other upgrades elsewhere and probably some fixes with couple of patches. As it had been for previous Julia upgrades. :-) Then, using this upgraded julia@1.6.4, there is a high probability that many julia-* packages would be broken too and thus they would require fixes. IMHO, if we want a working Julia in the delay for the merge, the best seems to just apply patch#52117 and let this Julia upgrade for another round. For what my opinion is here. :-) Cheers, simon --8<---------------cut here---------------start------------->8--- Error in testset precompile: Test Failed at /tmp/guix-build-julia-1.6.4.drv-0/jl_kkDGDX/Foo4b3a94a1a081a= 8cb.jl:109 Expression: g() =3D=3D=3D 2.0 Evaluated: 97.0 =3D=3D=3D 2.0 Error in testset precompile: Test Failed at /tmp/guix-build-julia-1.6.4.drv-0/julia-1.6.4/test/precompil= e.jl:240 Expression: Foo.ptr2 =3D=3D=3D Ptr{UInt8}(0) Evaluated: Ptr{UInt8} @0x0000000000000001 =3D=3D=3D Ptr{UInt8} @0x000000= 0000000000 Error in testset precompile: Test Failed at /tmp/guix-build-julia-1.6.4.drv-0/julia-1.6.4/test/precompil= e.jl:242 Expression: Foo.layout1::Vector{Ptr{Int8}} =3D=3D Ptr{Int8}[Ptr{Int8}(0),= Ptr{Int8}(0), Ptr{Int8}(-1)] Evaluated: Ptr{Int8}[Ptr{Int8} @0x0000000000000000, Ptr{Int8} @0x0000000= 000000001, Ptr{Int8} @0xffffffffffffffff] =3D=3D Ptr{Int8}[Ptr{Int8} @0x000= 0000000000000, Ptr{Int8} @0x0000000000000000, Ptr{Int8} @0xffffffffffffffff] Error in testset precompile: Test Failed at /tmp/guix-build-julia-1.6.4.drv-0/julia-1.6.4/test/precompil= e.jl:243 Expression: Foo.layout2 =3D=3D Any[Ptr{Int8}(0), Ptr{Int16}(0), Ptr{Int32= }(-1)] Evaluated: Any[Ptr{Int8} @0x0000000000000000, Ptr{Int16} @0x000000000000= 0001, Ptr{Int32} @0xffffffffffffffff] =3D=3D Any[Ptr{Int8} @0x0000000000000= 000, Ptr{Int16} @0x0000000000000000, Ptr{Int32} @0xffffffffffffffff] Error in testset precompile: Test Failed at /tmp/guix-build-julia-1.6.4.drv-0/julia-1.6.4/test/precompil= e.jl:269 Expression: ms isa Array{Any, 1} Evaluated: ErrorException("Required dependency FooBase4b3a94a1a081a8cb [= top-level] failed to load from a cache file.") isa Vector{Any} Error in testset precompile: Test Failed at /tmp/guix-build-julia-1.6.4.drv-0/julia-1.6.4/test/precompil= e.jl:267 Expression: begin ms =3D Base._require_from_serialized(cachefile) #=3D /tmp/guix-build-julia-1.6.4.drv-0/julia-1.6.4/test/precompile.jl:2= 69 =3D# @test ms isa Array{Any, 1} end Evaluated: Test.LogRecord[] Error in testset precompile: Test Failed at /tmp/guix-build-julia-1.6.4.drv-0/julia-1.6.4/usr/share/juli= a/stdlib/v1.6/Test/src/Test.jl:671 Expression: contains_warn(read(fname, String), $(Expr(:escape, "@ccallabl= e was already defined for this method name"))) Error in testset precompile: Test Failed at /tmp/guix-build-julia-1.6.4.drv-0/julia-1.6.4/test/precompil= e.jl:291 Expression: modules =3D=3D [Base.PkgId(Foo) =3D> Base.module_build_id(Foo= )] Evaluated: Pair{Base.PkgId, UInt64}[Foo4b3a94a1a081a8cb [top-level] =3D>= 0x000714cda79c2f8a] =3D=3D Pair{Base.PkgId, UInt64}[Foo4b3a94a1a081a8cb [t= op-level] =3D> 0x000714cdcc92a9f5] Error in testset precompile: Test Failed at /tmp/guix-build-julia-1.6.4.drv-0/julia-1.6.4/test/precompil= e.jl:304 Expression: Dict(modules) =3D=3D merge(Dict((let m =3D Base.PkgId(s) m =3D> Base.module_build_id(Base.root_module(m)) end for s =3D ["Base", "Core", "Main", string(Foo2_module), str= ing(FooBase_module)])), Dict((let m =3D Base.root_module(Base, s) Base.PkgId(m) =3D> Base.module_build_id(m) end for s =3D [:ArgTools, :Artifacts, :Base64, :CRC32c, :Dates,= :DelimitedFiles, :Distributed, :Downloads, :FileWatching, :Future, :Intera= ctiveUtils, :LazyArtifacts, :LibCURL, :LibCURL_jll, :LibGit2, :Libdl, :Line= arAlgebra, :Logging, :Markdown, :Mmap, :MozillaCACerts_jll, :NetworkOptions= , :Pkg, :Printf, :Profile, :p7zip_jll, :REPL, :Random, :SHA, :Serialization= , :SharedArrays, :Sockets, :SparseArrays, :Statistics, :SuiteSparse, :TOML,= :Tar, :Test, :UUIDs, :Unicode, :nghttp2_jll]))) Evaluated: Dict{Base.PkgId, UInt64}(Future [9fa8497b-333b-5362-9e8d-4d06= 56e87820] =3D> 0x00071396ddcbf382, p7zip_jll [3f19e933-33d8-53b3-aaab-bd511= 0c3b7a0] =3D> 0x00071399314d1416, FileWatching [7b1f6079-737a-58dc-b8bc-7a2= ca5c1b5ee] =3D> 0x000713941e0295e8, Profile [9abbd945-dff8-562f-b5e8-e1ebf5= ef1b79] =3D> 0x000713973b8b20ed, UUIDs [cf7118a7-6976-5b1a-9a39-7adc72f591a= 4] =3D> 0x00071397dc9eef34, MozillaCACerts_jll [14a3606d-f60d-562e-9121-12d= 972cd8159] =3D> 0x0007139902e9e715, Logging [56ddb016-857b-54e1-b83d-db4d58= db5568] =3D> 0x000713942216cc44, LazyArtifacts [4af54fe1-eca0-43a8-85a7-787= d91b784e3] =3D> 0x00071399fd30494b, Sockets [6462fe0b-24de-5631-8697-dd941f= 90decc] =3D> 0x000713944365e25e, LinearAlgebra [37e2e46d-f89d-539d-b4ee-838= fcccc9c8e] =3D> 0x0007139455f70aa6=E2=80=A6) =3D=3D Dict{Base.PkgId, UInt64= }(FileWatching [7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee] =3D> 0x000713941e0295= e8, MozillaCACerts_jll [14a3606d-f60d-562e-9121-12d972cd8159] =3D> 0x000713= 9902e9e715, UUIDs [cf7118a7-6976-5b1a-9a39-7adc72f591a4] =3D> 0x00071397dc9= eef34, Logging [56ddb016-857b-54e1-b83d-db4d58db5568] =3D> 0x000713942216cc= 44, Markdown [d6f4376e-aef5-505a-96c1-9c027394607a] =3D> 0x00071395ecfc76c0= , Unicode [4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5] =3D> 0x00071394501d1f19, F= ooBase4b3a94a1a081a8cb [top-level] =3D> 0x000714cdd480d344, CRC32c [8bf52ea= 8-c179-5cab-976a-9e18b702a9bc] =3D> 0x000713941c4e26b1, Main [top-level] = =3D> 0x0007137d8d13f4e8, Base64 [2a0f44e3-6c83-55bd-87e4-b1978d98bd5f] =3D>= 0x0007139416f91bb6=E2=80=A6) Error in testset precompile: Test Failed at /tmp/guix-build-julia-1.6.4.drv-0/julia-1.6.4/test/precompil= e.jl:413 Expression: (Base.pkgorigins[id1]).cachepath =3D=3D cachefile Evaluated: nothing =3D=3D "/tmp/guix-build-julia-1.6.4.drv-0/jl_kkDGDX/c= ompiled/v1.6/UsesB4b3a94a1a081a8cb.ji" Error in testset precompile: Test Failed at /tmp/guix-build-julia-1.6.4.drv-0/julia-1.6.4/test/precompil= e.jl:449 Expression: Base.stale_cachefile(FooBar_file, joinpath(cachedir, "FooBar.= ji")) isa Vector Evaluated: true isa Vector{T} where T Error in testset precompile: Test Failed at /tmp/guix-build-julia-1.6.4.drv-0/julia-1.6.4/test/precompil= e.jl:456 Expression: Base.stale_cachefile(relFooBar_file, joinpath(cachedir, "FooB= ar.ji")) isa Vector Evaluated: true isa Vector{T} where T Error in testset precompile: Test Failed at /tmp/guix-build-julia-1.6.4.drv-0/julia-1.6.4/test/precompil= e.jl:468 Expression: Base.stale_cachefile(FooBar1_file, joinpath(cachedir2, "FooBa= r1.ji")) isa Vector Evaluated: true isa Vector{T} where T Error in testset precompile: Test Failed at /tmp/guix-build-julia-1.6.4.drv-0/julia-1.6.4/test/precompil= e.jl:561 Expression: t1_yes =3D=3D t2_yes Evaluated: "1.637953005216387e9" =3D=3D "1.637953005549356e9" Error in testset precompile: Test Failed at /tmp/guix-build-julia-1.6.4.drv-0/julia-1.6.4/test/precompil= e.jl:595 Expression: read(fname, String) =3D=3D "Iterators\n" Evaluated: "=E2=94=8C Warning: The call to compilecache failed to create= a usable precompiled cache file for Test6c92f26 [top-level]\n=E2=94=82 e= xception =3D Required dependency Iterators [top-level] failed to load from = a cache file.\n=E2=94=94 @ Base loading.jl:1058\nIterators\n" =3D=3D "Itera= tors\n" Error in testset precompile: Test Failed at /tmp/guix-build-julia-1.6.4.drv-0/julia-1.6.4/test/precompil= e.jl:595 Expression: read(fname, String) =3D=3D "Iterators\n" Evaluated: "=E2=94=8C Warning: The call to compilecache failed to create= a usable precompiled cache file for Test6c92f26 [top-level]\n=E2=94=82 e= xception =3D Required dependency Iterators [top-level] failed to load from = a cache file.\n=E2=94=94 @ Base loading.jl:1058\nIterators\n" =3D=3D "Itera= tors\n" Error in testset precompile: Test Failed at /tmp/guix-build-julia-1.6.4.drv-0/julia-1.6.4/test/precompil= e.jl:684 Expression: Distributed.remotecall_eval(Main, wid, quote Base.module_build_id(Base.root_module(Main, $(QuoteNode(ModuleB= )))) end) =3D=3D uuid Evaluated: 0x000714d2da74164c =3D=3D 0x000714d2b3f4a19c --8<---------------cut here---------------end--------------->8---