From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ben Woodcroft Subject: Re: R Date: Thu, 8 Sep 2016 21:41:59 +1000 Message-ID: <63b53a76-8343-38cf-ee2b-81ea517e50d9@uq.edu.au> References: <20160204193924.GA8852@debian> <20160205100040.GA4213@debian.eduroam.u-bordeaux.fr> <20160205190236.GA8063@debian> <20160205195449.GA8899@debian> <87lh6yx4rr.fsf@mdc-berlin.de> <20160205222426.GA11582@debian> Mime-Version: 1.0 Content-Type: multipart/mixed; boundary="------------43587B2E83620154E05D8C42" Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:56234) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bhxim-0004Bi-Ka for guix-devel@gnu.org; Thu, 08 Sep 2016 07:42:21 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1bhxii-0000bp-Ek for guix-devel@gnu.org; Thu, 08 Sep 2016 07:42:19 -0400 Received: from mailhub1.soe.uq.edu.au ([130.102.132.208]:58195 helo=newmailhub.uq.edu.au) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bhxih-0000a1-Ri for guix-devel@gnu.org; Thu, 08 Sep 2016 07:42:16 -0400 In-Reply-To: <20160205222426.GA11582@debian> List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: Andreas Enge , Ricardo Wurmus Cc: guix-devel@gnu.org This is a multi-part message in MIME format. --------------43587B2E83620154E05D8C42 Content-Type: text/plain; charset=utf-8; format=flowed Content-Transfer-Encoding: quoted-printable X-MIME-Autoconverted: from 8bit to quoted-printable by newmailhub.uq.edu.au id u88Bg13D021897 Hi, I thought I'd respond to this old thread now that the openblas eigen=20 error seems to be fixed. I'm interested in using openblas so that the=20 (as yet not in master) WGCNA package works faster, among other things: https://labs.genetics.ucla.edu/horvath/CoexpressionNetwork/Rpackages/WGCN= A/faq.html On 06/02/16 08:24, Andreas Enge wrote: > On Fri, Feb 05, 2016 at 09:48:24PM +0100, Ricardo Wurmus wrote: >> I would suggest to drop =E2=80=9C--with-lapack=E2=80=9D, too. (I have= n=E2=80=99t found the time >> to try building without this flag just now.) The manual says: >> I don=E2=80=99t remember why I added it in the first place, so I think= it=E2=80=99s best >> to drop it, considering that the manual tells us only to do it if we >> know what we want to achieve by adding it. > I did, and it still builds on arm. Shall I push the attached patch to core-updates? I tested it on x86_64.=20 Or, would you mind testing it on arm please Andreas? Thanks, ben --------------43587B2E83620154E05D8C42 Content-Type: text/x-patch; name="0001-gnu-r-Add-openblas-input.patch" Content-Disposition: attachment; filename="0001-gnu-r-Add-openblas-input.patch" Content-Transfer-Encoding: 7bit >From 012c013661c739b8d90be8bcbfce13349dcaee89 Mon Sep 17 00:00:00 2001 From: Ben J Woodcroft Date: Thu, 8 Sep 2016 21:14:12 +1000 Subject: [PATCH] gnu: r: Add openblas input. * gnu/packages/statistics.scm (r)[inputs]: Add openblas. [arguments]: Adapt configure flags. --- gnu/packages/statistics.scm | 2 ++ 1 file changed, 2 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 990f2fc..e34bcec 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -136,6 +136,7 @@ be output in text, PostScript, PDF or HTML.") (lambda _ (zero? (system* "make" "install-info"))))) #:configure-flags '("--with-cairo" + "--with-blas=openblas" "--with-libpng" "--with-jpeglib" "--with-libtiff" @@ -170,6 +171,7 @@ be output in text, PostScript, PDF or HTML.") ("pango" ,pango) ("curl" ,curl) ("tzdata" ,tzdata) + ("openblas" ,openblas) ("gfortran" ,gfortran) ("icu4c" ,icu4c) ("libjpeg" ,libjpeg) -- 2.9.2 --------------43587B2E83620154E05D8C42--