From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp0 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id 0O4cKezptF+dRQAA0tVLHw (envelope-from ) for ; Wed, 18 Nov 2020 09:31:24 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp0 with LMTPS id qg79JOzptF9LbAAA1q6Kng (envelope-from ) for ; Wed, 18 Nov 2020 09:31:24 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 29B8594006E for ; Wed, 18 Nov 2020 09:31:24 +0000 (UTC) Received: from localhost ([::1]:58158 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kfJoB-0003Rl-0F for larch@yhetil.org; Wed, 18 Nov 2020 04:31:23 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:39834) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kfJo2-0003RR-3f for guix-devel@gnu.org; Wed, 18 Nov 2020 04:31:14 -0500 Received: from fencepost.gnu.org ([2001:470:142:3::e]:51057) by eggs.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kfJo1-00060L-Qk; Wed, 18 Nov 2020 04:31:13 -0500 Received: from 2001-1c02-0b2a-aa00-93bf-7c8c-0fae-b738.cable.dynamic.v6.ziggo.nl ([2001:1c02:b2a:aa00:93bf:7c8c:fae:b738]:57138) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_256_CBC_SHA1:256) (Exim 4.82) (envelope-from ) id 1kfJo0-0005LW-PE; Wed, 18 Nov 2020 04:31:13 -0500 Message-ID: <63ad286432442f3c6c22acf60b50632d1a4d4b8d.camel@gnu.org> Subject: Re: Updating to latest Bioconductor release From: Roel Janssen To: zimoun , guix-devel@gnu.org Date: Wed, 18 Nov 2020 10:31:06 +0100 In-Reply-To: <86tutnmvyn.fsf@gmail.com> References: <86tutnmvyn.fsf@gmail.com> Content-Type: text/plain; charset="UTF-8" User-Agent: Evolution 3.38.1 (3.38.1-1.fc33) MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-BeenThere: guix-devel@gnu.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+larch=yhetil.org@gnu.org Sender: "Guix-devel" X-Scanner: ns3122888.ip-94-23-21.eu Authentication-Results: aspmx1.migadu.com; dkim=none; dmarc=pass (policy=none) header.from=gnu.org; spf=pass (aspmx1.migadu.com: domain of guix-devel-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-devel-bounces@gnu.org X-Spam-Score: -1.51 X-TUID: vEIhakzjPMqu On Tue, 2020-11-17 at 23:58 +0100, zimoun wrote: > Hi Roel, > > Just to let you know: > >   > > I think the failure is coming from IO on the Berlin machine. > > Are you building this branch too? I fixed the build issue with r-delayedarray and a couple of others on my local machine. I also updated the bioconductor version variable to 3.12. Can I push these changes to the "wip-r" branch, along with updates of the many packages involved? I still have about 30 packages to fix the build for before we can consider merging to master. Kind regards, Roel Janssen