From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ben Woodcroft Subject: [PATCH] Update biopython to 1.66. Date: Wed, 11 Nov 2015 21:28:00 +1000 Message-ID: <56432640.8050904@uq.edu.au> Mime-Version: 1.0 Content-Type: multipart/mixed; boundary="------------060603040507090801080700" Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:35661) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1ZwTZT-0004cx-IE for guix-devel@gnu.org; Wed, 11 Nov 2015 06:28:12 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1ZwTZQ-0000or-B8 for guix-devel@gnu.org; Wed, 11 Nov 2015 06:28:11 -0500 Received: from mailhub1.soe.uq.edu.au ([130.102.132.208]:51782 helo=newmailhub.uq.edu.au) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1ZwTZP-0000mf-Ow for guix-devel@gnu.org; Wed, 11 Nov 2015 06:28:08 -0500 Received: from smtp2.soe.uq.edu.au (smtp2.soe.uq.edu.au [10.138.113.41]) by newmailhub.uq.edu.au (8.14.5/8.14.5) with ESMTP id tABBS2Rj014296 for ; Wed, 11 Nov 2015 21:28:03 +1000 Received: from [192.168.1.105] ([103.25.181.216]) (authenticated bits=0) by smtp2.soe.uq.edu.au (8.14.5/8.14.5) with ESMTP id tABBS1NG043059 (version=TLSv1.2 cipher=DHE-RSA-AES128-SHA bits=128 verify=NOT) for ; Wed, 11 Nov 2015 21:28:02 +1000 List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org To: "guix-devel@gnu.org" This is a multi-part message in MIME format. --------------060603040507090801080700 Content-Type: text/plain; charset=utf-8; format=flowed Content-Transfer-Encoding: 7bit I also figure with the shiny new updaters it might make things easier if pypi is used instead of the biopython site. thanks. --------------060603040507090801080700 Content-Type: text/x-patch; name="0001-gnu-python-biopython-python2-biopython-Update-to-1.6.patch" Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename*0="0001-gnu-python-biopython-python2-biopython-Update-to-1.6.pa"; filename*1="tch" >From bb6e9ba482ea8602afafd9f6a310a8053544bd80 Mon Sep 17 00:00:00 2001 From: Ben Woodcroft Date: Wed, 11 Nov 2015 21:27:02 +1000 Subject: [PATCH] gnu: python-biopython, python2-biopython: Update to 1.66. * gnu/packages/bioinformatics.scm (python-biopython, python2-biopython): Update to 1.66. [source]: Use PyPi instead of biopython.org. --- gnu/packages/bioinformatics.scm | 9 ++++----- 1 file changed, 4 insertions(+), 5 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f13e405..706a871 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -348,15 +348,14 @@ provide a coordinated and extensible framework to do computational biology.") (define-public python-biopython (package (name "python-biopython") - (version "1.65") + (version "1.66") (source (origin (method url-fetch) - (uri (string-append - "http://biopython.org/DIST/biopython-" - version ".tar.gz")) + ;; use PyPi rather than biopython.org to ease updating + (uri (pypi-uri "biopython" version)) (sha256 (base32 - "13m8s9jkrw40zvdp1rl709n6lmgdh4f52aann7gzr6sfp0fwhg26")))) + "1gdv92593klimg22icf5j9by7xiq86jnwzkpz4abaa05ylkdf6hp")))) (build-system python-build-system) (inputs `(("python-numpy" ,python-numpy))) -- 2.5.0 --------------060603040507090801080700--